Sphingobium sp. RAC03

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium sp. RAC03 is a notable bacterium characterized by the presence of flagella, which suggests it has motility capabilities. This trait may enable it to navigate through various environments, potentially aiding in its ecological interactions and nutrient acquisition. The genomic structure of Sphingobium sp. RAC03 is complex, featuring a total of five replicons. This characteristic may imply a sophisticated level of genetic regulation and adaptability, as multiple replicons can enable the organism to carry diverse genetic information that may be advantageous in fluctuating environmental conditions. The strain has been cataloged with several accession numbers, including NZ_CP016454.1, NZ_CP016455.1, NZ_CP016456.1, NZ_CP016453.1, and NZ_CP016457.1. These accessions provide a basis for further research and allow for the exploration of its genomic features and potential applications in biotechnology or environmental microbiology. The combination of motility and complex genetic architecture may position Sphingobium sp. RAC03 as a versatile organism within its ecosystem. Its ability to move and adapt to different conditions could play a significant role in biogeochemical cycles, particularly in environments where it can interact with various substrates and microbial communities. Understanding these traits may contribute to insights into its ecological roles and potential uses in bioremediation or other applications in microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium sp. RAC03
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium sp. RAC03 plasmid pBSY17_4, complete sequence.

Gene Summary

Adenine Count

9470 bp

Thymine Count

9669 bp

Guanine Count

15180 bp

Cytosine Count

15418 bp

Genome Length

49737 bp

Protein-coding Genes

49 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf3572 domain-containing proteinBSY17_RS11305Not AvailablePositive1386835 - 13871229997.06
hypothetical proteinBSY17_RS11310Not AvailablePositive1387119 - 138777524340.1
rida family proteinBSY17_RS11315Not AvailablePositive1387772 - 138823315634.1
glycerophosphodiester phosphodiesterase family proteinBSY17_RS11320Not AvailablePositive1388217 - 138894225786.4
gnat family n-acetyltransferaseBSY17_RS11325Not AvailablePositive1388935 - 139006541559.9
sel1-like repeat proteinBSY17_RS11330Not AvailableNegative1390069 - 139036510512.5
multidrug effflux mfs transporterBSY17_RS11335Not AvailablePositive1390591 - 139186545987.8
amino acid permeaseBSY17_RS11340Not AvailableNegative1391942 - 139352554971.3
peptidoglycan editing factor pgefBSY17_RS11345Not AvailablePositive1393675 - 139443626414.2
Trna-metNot AvailableNot AvailablePositive1394495 - 1394571Not Available

Displaying genes 2291 – 2300 of 4203 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.