Sphingobium sp. RAC03

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium sp. RAC03 is a notable bacterium characterized by the presence of flagella, which suggests it has motility capabilities. This trait may enable it to navigate through various environments, potentially aiding in its ecological interactions and nutrient acquisition. The genomic structure of Sphingobium sp. RAC03 is complex, featuring a total of five replicons. This characteristic may imply a sophisticated level of genetic regulation and adaptability, as multiple replicons can enable the organism to carry diverse genetic information that may be advantageous in fluctuating environmental conditions. The strain has been cataloged with several accession numbers, including NZ_CP016454.1, NZ_CP016455.1, NZ_CP016456.1, NZ_CP016453.1, and NZ_CP016457.1. These accessions provide a basis for further research and allow for the exploration of its genomic features and potential applications in biotechnology or environmental microbiology. The combination of motility and complex genetic architecture may position Sphingobium sp. RAC03 as a versatile organism within its ecosystem. Its ability to move and adapt to different conditions could play a significant role in biogeochemical cycles, particularly in environments where it can interact with various substrates and microbial communities. Understanding these traits may contribute to insights into its ecological roles and potential uses in bioremediation or other applications in microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium sp. RAC03
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium sp. RAC03 plasmid pBSY17_4, complete sequence.

Gene Summary

Adenine Count

9470 bp

Thymine Count

9669 bp

Guanine Count

15180 bp

Cytosine Count

15418 bp

Genome Length

49737 bp

Protein-coding Genes

49 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glutaminyl-peptide cyclotransferaseBSY17_RS09950Not AvailableNegative1125687 - 112643928400.8
folate-binding protein ygfzBSY17_RS09955Not AvailableNegative1126451 - 112718827166.5
dihydroorotaseBSY17_RS09960Not AvailablePositive1127265 - 112859648141.2
eama family transporter rardBSY17_RS09965Not AvailableNegative1128593 - 112945030695.0
hypothetical proteinBSY17_RS09970Not AvailableNegative1129492 - 11297137789.16
hypothetical proteinBSY17_RS09975Not AvailablePositive1129873 - 113062225375.1
fluoride efflux transporter crcbBSY17_RS09980Not AvailablePositive1130712 - 113109813059.4
rlua family pseudouridine synthaseBSY17_RS09985Not AvailablePositive1131095 - 113254952197.4
fmn-binding negative transcriptional regulatorBSY17_RS09990Not AvailablePositive1132546 - 113314821855.3
had-ia family hydrolaseBSY17_RS09995Not AvailablePositive1133145 - 113380423204.0

Displaying genes 2011 – 2020 of 4203 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.