Rhodoferax koreense str. DCY110

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Rhodoferax

Description

Rhodoferax koreense str. DCY110 is a Gram-negative, rod-shaped bacterium distinguished by the presence of flagella. This motility structure enables the organism to navigate its environment effectively. The strain has a single replicon, indicating a streamlined genetic organization, which can be advantageous for its adaptability and survival in various ecological niches. The genomic sequence of Rhodoferax koreense str. DCY110 is cataloged under the accession NZ_CP019236.1, which provides a basis for further research into its genetic and metabolic capabilities. As a member of the Rhodoferax genus, this bacterium is likely involved in biogeochemical cycles, particularly in anaerobic environments where it may play a role in processes such as the degradation of organic matter and the cycling of nutrients. The presence of flagella suggests that Rhodoferax koreense str. DCY110 may exhibit motility that allows it to exploit various ecological niches, potentially contributing to its role in microbial communities. Understanding the characteristics of this strain can provide insights into its ecological functions, particularly in environments where anaerobic processes are prevalent. Further exploration of its metabolic pathways and interactions with other microorganisms could reveal its significance in ecological balance and nutrient cycling.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusRhodoferax
SpeciesRhodoferax koreensis
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Rhodoferax koreense str. DCY110
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodoferax koreense strain DCY-110 chromosome, complete genome.

Gene Summary

Adenine Count

978004 bp

Thymine Count

984090 bp

Guanine Count

1923995 bp

Cytosine Count

1914384 bp

Genome Length

5800473 bp

Protein-coding Genes

5257 genes

Non-Coding Genes

161 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
methionine synthaseRD110_RS00890Not AvailablePositive196514 - 199255100289.0
hypothetical proteinRD110_RS00895Not AvailablePositive199428 - 19990116322.6
yihy/virulence factor brkb family proteinRD110_RS00900Not AvailablePositive199962 - 20084631669.6
pep-cterm/exosortase system-associated acyltransferaseRD110_RS00905Not AvailablePositive201251 - 20206030519.6
yifb family mg chelatase-like aaa atpaseRD110_RS00910Not AvailableNegative202072 - 20361954569.7
p-ii family nitrogen regulatorRD110_RS00915Not AvailablePositive203993 - 20433112245.9
ammonium transporterRD110_RS00920Not AvailablePositive204363 - 20591052558.3
aldose 1-epimeraseRD110_RS00925Not AvailablePositive206059 - 20692230795.4
smp-30/gluconolactonase/lre family proteinRD110_RS00930Not AvailablePositive206919 - 20784833776.7
glycolate oxidase subunit glceRD110_RS00935Not AvailablePositive207938 - 20906539457.5

Displaying genes 361 – 370 of 5418 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.