Agrobacterium sp. RAC06

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium sp. RAC06 is a Gram-negative bacterium characterized by its rod shape and the presence of flagella, which facilitate motility. This species possesses two replicons, indicating a complex genomic structure that may contribute to its adaptability and ecological versatility. The genome of Agrobacterium sp. RAC06 is represented by the accession numbers NZ_CP016499.1 and NZ_CP016500.1, which provide a resource for further genomic studies. The traits of Agrobacterium sp. RAC06 suggest potential roles in biotechnological applications, particularly in agriculture. Members of the Agrobacterium genus are known for their ability to transfer DNA to plant cells, a process that can be harnessed for genetic engineering in crops. This ability, combined with its motile nature due to flagella, may allow Agrobacterium sp. RAC06 to effectively interact with plant hosts in its environment. From a biological and ecological perspective, the presence of two replicons in Agrobacterium sp. RAC06 may enhance its genetic diversity and adaptability to various environmental conditions. This trait could enable the bacterium to thrive in different niches, potentially influencing soil health and plant interactions. Thus, the characteristics of Agrobacterium sp. RAC06 not only highlight its significance in research but also underscore its potential impact on ecosystems and agricultural practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium sp. RAC06
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Agrobacterium sp. RAC06
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium sp. RAC06 plasmid pBSY240_1, complete sequence.

Gene Summary

Adenine Count

65145 bp

Thymine Count

71184 bp

Guanine Count

95475 bp

Cytosine Count

91703 bp

Genome Length

323507 bp

Protein-coding Genes

303 genes

Non-Coding Genes

1 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rna-binding proteinBSY240_RS13290Not AvailablePositive2749861 - 275054123932.7
translation initiation factor if-2BSY240_RS13295Not AvailablePositive2750643 - 275335498086.4
30s ribosome-binding factor rbfaBSY240_RS13300Not AvailablePositive2753510 - 275391415245.2
trna pseudouridine(55) synthase trubBSY240_RS13305Not AvailablePositive2753927 - 275485633694.3
30s ribosomal protein s15BSY240_RS13310Not AvailablePositive2755007 - 275527610227.4
polyribonucleotide nucleotidyltransferaseBSY240_RS13315Not AvailablePositive2755593 - 275773777384.9
class i sam-dependent methyltransferaseBSY240_RS13320Not AvailablePositive2757814 - 275883036970.1
arac family transcriptional regulatorBSY240_RS13325Not AvailablePositive2758947 - 275996938289.6
luxr c-terminal-related transcriptional regulatorBSY240_RS13330Not AvailablePositive2760253 - 27604416695.04
beta-ketoacyl-acp synthase iBSY240_RS13335Not AvailableNegative2760529 - 276175243185.1

Displaying genes 2991 – 3000 of 4755 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.