Agrobacterium sp. RAC06

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium sp. RAC06 is a Gram-negative bacterium characterized by its rod shape and the presence of flagella, which facilitate motility. This species possesses two replicons, indicating a complex genomic structure that may contribute to its adaptability and ecological versatility. The genome of Agrobacterium sp. RAC06 is represented by the accession numbers NZ_CP016499.1 and NZ_CP016500.1, which provide a resource for further genomic studies. The traits of Agrobacterium sp. RAC06 suggest potential roles in biotechnological applications, particularly in agriculture. Members of the Agrobacterium genus are known for their ability to transfer DNA to plant cells, a process that can be harnessed for genetic engineering in crops. This ability, combined with its motile nature due to flagella, may allow Agrobacterium sp. RAC06 to effectively interact with plant hosts in its environment. From a biological and ecological perspective, the presence of two replicons in Agrobacterium sp. RAC06 may enhance its genetic diversity and adaptability to various environmental conditions. This trait could enable the bacterium to thrive in different niches, potentially influencing soil health and plant interactions. Thus, the characteristics of Agrobacterium sp. RAC06 not only highlight its significance in research but also underscore its potential impact on ecosystems and agricultural practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium sp. RAC06
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Agrobacterium sp. RAC06
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium sp. RAC06 plasmid pBSY240_1, complete sequence.

Gene Summary

Adenine Count

65145 bp

Thymine Count

71184 bp

Guanine Count

95475 bp

Cytosine Count

91703 bp

Genome Length

323507 bp

Protein-coding Genes

303 genes

Non-Coding Genes

1 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
diguanylate cyclase domain-containing proteinBSY240_RS05990Not AvailablePositive1243090 - 124411236461.8
abc-f family atp-binding cassette domain-containing proteinBSY240_RS05995Not AvailablePositive1244190 - 124607968253.7
methyl-accepting chemotaxis proteinBSY240_RS06000Not AvailablePositive1246518 - 124847069953.2
dna polymerase iii subunit chiBSY240_RS06005Not AvailableNegative1248542 - 124899117131.9
leucyl aminopeptidaseBSY240_RS06010Not AvailableNegative1249009 - 125050552344.2
lptf/lptg family permeaseBSY240_RS06015Not AvailablePositive1250775 - 125194142704.4
lps export abc transporter permease lptgBSY240_RS06020Not AvailablePositive1251938 - 125302039719.8
lps-assembly protein lptdBSY240_RS06025Not AvailablePositive1253092 - 125535682364.9
peptidylprolyl isomeraseBSY240_RS06030Not AvailablePositive1255484 - 125642834235.1
4-hydroxythreonine-4-phosphate dehydrogenase pdxaBSY240_RS06035Not AvailablePositive1256447 - 125746935649.1

Displaying genes 1511 – 1520 of 4755 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.