Pelobium manganitolerans str. YS-25

rodfacultative aerobe/anaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pelobium

Description

Pelobium manganitolerans strain YS-25 is a Gram-negative bacterium characterized by its rod shape and mesophilic nature, with an optimal growth temperature of 29°C. This organism exhibits a facultative aerobic/anaerobic metabolism, allowing it to thrive in both oxygen-rich and oxygen-deprived environments. The genetic information for Pelobium manganitolerans str. YS-25 is contained within a single replicon, indicating a streamlined genomic structure. The accession number for its genomic data is MBTA00000000.1. The ability of Pelobium manganitolerans to tolerate manganese suggests potential ecological roles in environments with elevated levels of this metal. This trait may enable the bacterium to participate in biogeochemical cycling of manganese and other elements, contributing to nutrient availability and ecological balance in its habitat. Such characteristics underscore the importance of microbial diversity in bioremediation processes and ecosystem functioning, particularly in environments impacted by metal contamination.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPelobium
SpeciesPelobium manganitolerans
StrainYS-25

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsfacultative aerobe/anaerobe
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pelobium manganitolerans strain YS-25 Y5-25_scaffold9, whole

Gene Summary

Adenine Count

1159025 bp

Thymine Count

1143484 bp

Guanine Count

824805 bp

Cytosine Count

805451 bp

Genome Length

3932770 bp

Protein-coding Genes

3341 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nad(p)-dependent oxidoreductaseBCY91_14860Not AvailableNegative1016633 - 101755033943.0
shikimate kinaseBCY91_14865Not AvailableNegative1017584 - 101812319734.8
doxx family proteinBCY91_14870Not AvailableNegative1018172 - 101934144138.2
hypothetical proteinBCY91_14875Not AvailableNegative1019343 - 101988520499.8
dihydropteroate synthaseBCY91_14880Not AvailablePositive1019941 - 102080431701.4
tigr00159 family proteinBCY91_14885Not AvailablePositive1020814 - 102160529834.8
short-chain dehydrogenaseBCY91_14890Not AvailablePositive1021660 - 102252932439.5
hypothetical proteinBCY91_14895Not AvailableNegative1022574 - 102296615318.4
isocitrate dehydrogenase, nadp-dependentBCY91_14900Not AvailableNegative1023095 - 102531479712.7
amino acid permeaseBCY91_14905Not AvailablePositive1025675 - 102747166332.1

Displaying genes 851 – 860 of 3392 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.