Lacunisphaera limnophila str. IG16b

Kingdom

Pseudomonadati

Phylum

Verrucomicrobiota

Class

Opitutia

Order

Opitutales

Family

Opitutaceae

Genus

Lacunisphaera

Description

Lacunisphaera limnophila str. IG16b is a freshwater bacterium characterized by a single replicon. The organism's genetic material is accessible through the accession number NZ_CP016094.1, which provides a reference for further research and analysis. As a member of the microbial community in freshwater habitats, Lacunisphaera limnophila str. IG16b plays a role in the aquatic ecosystem. Freshwater environments are often characterized by diverse microbial populations that contribute to nutrient cycling and the overall health of the ecosystem. The presence of this bacterium suggests it may be involved in interactions with other microorganisms or contribute to the degradation of organic materials within its habitat. The single replicon structure indicates a streamlined genomic organization, which may provide insights into its adaptability and efficiency in utilizing resources in freshwater environments. Understanding the specific metabolic pathways and ecological roles of Lacunisphaera limnophila str. IG16b can enhance knowledge of microbial dynamics in freshwater ecosystems and their contributions to ecological balance. Overall, the study of Lacunisphaera limnophila str. IG16b can offer valuable perspectives on microbial interactions in freshwater habitats, emphasizing the importance of such organisms in maintaining ecological integrity.

Taxonomy

KingdomPseudomonadati
PhylumVerrucomicrobiota
ClassOpitutia
OrderOpitutales
FamilyOpitutaceae
GenusLacunisphaera
SpeciesLacunisphaera limnophila
StrainIG16b

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatFresh water
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Lacunisphaera limnophila strain IG16b chromosome, complete genome.

Gene Summary

Adenine Count

703412 bp

Thymine Count

704368 bp

Guanine Count

1404141 bp

Cytosine Count

1387363 bp

Genome Length

4199284 bp

Protein-coding Genes

3527 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
4-hydroxy-tetrahydrodipicolinate reductaseVerru16B_RS14515Not AvailablePositive3476359 - 347709025425.7
holliday junction branch migration protein ruvaVerru16B_RS14520Not AvailablePositive3477087 - 347769520927.5
anti-sigma factorVerru16B_RS14525Not AvailableNegative3477748 - 347844925892.6
sigma-70 family rna polymerase sigma factorVerru16B_RS14530Not AvailableNegative3478446 - 347905123362.4
Trna-lysNot AvailableNot AvailablePositive3479234 - 3479308Not Available
response regulator transcription factorVerru16B_RS14540Not AvailablePositive3479417 - 348008224144.5
ompa family proteinVerru16B_RS14545Not AvailablePositive3480171 - 348072219716.5
alpha-l-fucosidaseVerru16B_RS14550Not AvailableNegative3480806 - 348230256134.5
m20/m25/m40 family metallo-hydrolaseVerru16B_RS14555Not AvailableNegative3482390 - 348375750044.6
m48 family metallopeptidaseVerru16B_RS14560Not AvailableNegative3483809 - 348459127987.7

Displaying genes 2921 – 2930 of 3578 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.