Lacunisphaera limnophila str. IG16b

Kingdom

Pseudomonadati

Phylum

Verrucomicrobiota

Class

Opitutia

Order

Opitutales

Family

Opitutaceae

Genus

Lacunisphaera

Description

Lacunisphaera limnophila str. IG16b is a freshwater bacterium characterized by a single replicon. The organism's genetic material is accessible through the accession number NZ_CP016094.1, which provides a reference for further research and analysis. As a member of the microbial community in freshwater habitats, Lacunisphaera limnophila str. IG16b plays a role in the aquatic ecosystem. Freshwater environments are often characterized by diverse microbial populations that contribute to nutrient cycling and the overall health of the ecosystem. The presence of this bacterium suggests it may be involved in interactions with other microorganisms or contribute to the degradation of organic materials within its habitat. The single replicon structure indicates a streamlined genomic organization, which may provide insights into its adaptability and efficiency in utilizing resources in freshwater environments. Understanding the specific metabolic pathways and ecological roles of Lacunisphaera limnophila str. IG16b can enhance knowledge of microbial dynamics in freshwater ecosystems and their contributions to ecological balance. Overall, the study of Lacunisphaera limnophila str. IG16b can offer valuable perspectives on microbial interactions in freshwater habitats, emphasizing the importance of such organisms in maintaining ecological integrity.

Taxonomy

KingdomPseudomonadati
PhylumVerrucomicrobiota
ClassOpitutia
OrderOpitutales
FamilyOpitutaceae
GenusLacunisphaera
SpeciesLacunisphaera limnophila
StrainIG16b

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatFresh water
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Lacunisphaera limnophila strain IG16b chromosome, complete genome.

Gene Summary

Adenine Count

703412 bp

Thymine Count

704368 bp

Guanine Count

1404141 bp

Cytosine Count

1387363 bp

Genome Length

4199284 bp

Protein-coding Genes

3527 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf2306 domain-containing proteinVerru16B_RS12970Not AvailableNegative3091319 - 309193022402.9
pas domain-containing sensor histidine kinaseVerru16B_RS12975Not AvailableNegative3091986 - 309333249117.7
sigma-54 dependent transcriptional regulatorVerru16B_RS12980Not AvailableNegative3093434 - 309480149966.2
hypothetical proteinVerru16B_RS12985Not AvailableNegative3094886 - 30951408447.65
abc transporter permeaseVerru16B_RS12990Not AvailableNegative3095358 - 309656643179.6
abc transporter atp-binding proteinVerru16B_RS12995Not AvailableNegative3096669 - 309743027550.4
efflux rnd transporter periplasmic adaptor subunitVerru16B_RS19065Not AvailableNegative3097436 - 309890851625.5
exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferaseVerru16B_RS13005Not AvailablePositive3099037 - 310045853487.1
hypothetical proteinVerru16B_RS13010Not AvailableNegative3100546 - 310122323254.2
exea family proteinVerru16B_RS13015Not AvailableNegative3101225 - 310204031554.2

Displaying genes 2611 – 2620 of 3578 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.