Lacunisphaera limnophila str. IG16b

Kingdom

Pseudomonadati

Phylum

Verrucomicrobiota

Class

Opitutia

Order

Opitutales

Family

Opitutaceae

Genus

Lacunisphaera

Description

Lacunisphaera limnophila str. IG16b is a freshwater bacterium characterized by a single replicon. The organism's genetic material is accessible through the accession number NZ_CP016094.1, which provides a reference for further research and analysis. As a member of the microbial community in freshwater habitats, Lacunisphaera limnophila str. IG16b plays a role in the aquatic ecosystem. Freshwater environments are often characterized by diverse microbial populations that contribute to nutrient cycling and the overall health of the ecosystem. The presence of this bacterium suggests it may be involved in interactions with other microorganisms or contribute to the degradation of organic materials within its habitat. The single replicon structure indicates a streamlined genomic organization, which may provide insights into its adaptability and efficiency in utilizing resources in freshwater environments. Understanding the specific metabolic pathways and ecological roles of Lacunisphaera limnophila str. IG16b can enhance knowledge of microbial dynamics in freshwater ecosystems and their contributions to ecological balance. Overall, the study of Lacunisphaera limnophila str. IG16b can offer valuable perspectives on microbial interactions in freshwater habitats, emphasizing the importance of such organisms in maintaining ecological integrity.

Taxonomy

KingdomPseudomonadati
PhylumVerrucomicrobiota
ClassOpitutia
OrderOpitutales
FamilyOpitutaceae
GenusLacunisphaera
SpeciesLacunisphaera limnophila
StrainIG16b

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatFresh water
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Lacunisphaera limnophila strain IG16b chromosome, complete genome.

Gene Summary

Adenine Count

703412 bp

Thymine Count

704368 bp

Guanine Count

1404141 bp

Cytosine Count

1387363 bp

Genome Length

4199284 bp

Protein-coding Genes

3527 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ring-cleaving dioxygenaseVerru16B_RS11635Not AvailableNegative2786272 - 278720734013.2
marr family winged helix-turn-helix transcriptional regulatorVerru16B_RS11640Not AvailableNegative2787249 - 278769216110.7
ribose 5-phosphate isomerase bVerru16B_RS11645Not AvailableNegative2787870 - 278830715843.9
hypothetical proteinVerru16B_RS11650Not AvailablePositive2788385 - 278882215738.8
had family hydrolaseVerru16B_RS11655Not AvailableNegative2788914 - 278960025087.8
sumf1/egtb/pvdo family nonheme iron enzymeVerru16B_RS11660Not AvailablePositive2789723 - 279185577460.3
dmt family transporterVerru16B_RS11665Not AvailableNegative2791897 - 279278130916.6
dihydrolipoyl dehydrogenaseVerru16B_RS11670Not AvailableNegative2792831 - 279420447559.9
2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferaseVerru16B_RS11675Not AvailableNegative2794315 - 279555643224.3
2-oxoglutarate dehydrogenase e1 componentVerru16B_RS11680Not AvailableNegative2795667 - 2798438102604.0

Displaying genes 2341 – 2350 of 3578 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.