Lacunisphaera limnophila str. IG16b

Kingdom

Pseudomonadati

Phylum

Verrucomicrobiota

Class

Opitutia

Order

Opitutales

Family

Opitutaceae

Genus

Lacunisphaera

Description

Lacunisphaera limnophila str. IG16b is a freshwater bacterium characterized by a single replicon. The organism's genetic material is accessible through the accession number NZ_CP016094.1, which provides a reference for further research and analysis. As a member of the microbial community in freshwater habitats, Lacunisphaera limnophila str. IG16b plays a role in the aquatic ecosystem. Freshwater environments are often characterized by diverse microbial populations that contribute to nutrient cycling and the overall health of the ecosystem. The presence of this bacterium suggests it may be involved in interactions with other microorganisms or contribute to the degradation of organic materials within its habitat. The single replicon structure indicates a streamlined genomic organization, which may provide insights into its adaptability and efficiency in utilizing resources in freshwater environments. Understanding the specific metabolic pathways and ecological roles of Lacunisphaera limnophila str. IG16b can enhance knowledge of microbial dynamics in freshwater ecosystems and their contributions to ecological balance. Overall, the study of Lacunisphaera limnophila str. IG16b can offer valuable perspectives on microbial interactions in freshwater habitats, emphasizing the importance of such organisms in maintaining ecological integrity.

Taxonomy

KingdomPseudomonadati
PhylumVerrucomicrobiota
ClassOpitutia
OrderOpitutales
FamilyOpitutaceae
GenusLacunisphaera
SpeciesLacunisphaera limnophila
StrainIG16b

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatFresh water
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Lacunisphaera limnophila strain IG16b chromosome, complete genome.

Gene Summary

Adenine Count

703412 bp

Thymine Count

704368 bp

Guanine Count

1404141 bp

Cytosine Count

1387363 bp

Genome Length

4199284 bp

Protein-coding Genes

3527 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lysm peptidoglycan-binding domain-containing proteinVerru16B_RS08400Not AvailablePositive2032778 - 203365632317.9
6-carboxytetrahydropterin synthaseVerru16B_RS08405Not AvailableNegative2033672 - 203412717357.5
oxygen-independent coproporphyrinogen iii oxidaseVerru16B_RS08410Not AvailableNegative2034142 - 203554252234.1
acyltransferaseVerru16B_RS08415Not AvailablePositive2035680 - 203681642425.6
aminotransferase class v-fold plp-dependent enzymeVerru16B_RS08420Not AvailableNegative2036831 - 203810245500.3
fe-s cluster assembly sulfur transfer protein sufuVerru16B_RS08425Not AvailableNegative2038111 - 203856616219.1
Trna-serNot AvailableNot AvailablePositive2038747 - 2038834Not Available
nadh-quinone oxidoreductase subunit nuobVerru16B_RS08435Not AvailablePositive2038990 - 203949918534.9
nadh-quinone oxidoreductase subunit cVerru16B_RS08440Not AvailablePositive2039496 - 204011622755.9
nadh dehydrogenase (quinone) subunit dVerru16B_RS08445Not AvailablePositive2040119 - 204135745795.1

Displaying genes 1691 – 1700 of 3578 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.