Donghicola sp. JL3646

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Donghicola

Description

Donghicola sp. JL3646 is characterized by having a single replicon, indicating a streamlined genomic structure. This trait may contribute to its adaptability and efficiency in various environments. The organism is associated with the accession LZFQ00000000.1, which serves as a reference for its genetic information and facilitates further research on its biology. The single replicon trait suggests that Donghicola sp. JL3646 may possess a simplified genetic organization compared to organisms with multiple replicons. This simplification could play a role in its adaptability, potentially allowing for quicker responses to environmental changes. Additionally, a singular replicon may imply a more straightforward regulatory mechanism for gene expression, which can be advantageous in fluctuating ecological niches. From a biological and ecological perspective, organisms with such genetic configurations may be particularly well-suited for survival in specific habitats, potentially leading to unique ecological roles. Understanding the genomic structure of Donghicola sp. JL3646 can provide insights into its metabolic capabilities and interactions within its ecosystem, as well as its evolutionary adaptations. Further exploration of its genetic and functional traits may yield valuable information on its ecological significance and potential applications in biotechnology or environmental management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusDonghicola
SpeciesDonghicola sp. JL3646
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Donghicola sp. JL3646 voucher KX022626 contig9, whole genome

Gene Summary

Adenine Count

699916 bp

Thymine Count

672980 bp

Guanine Count

855364 bp

Cytosine Count

895187 bp

Genome Length

3123447 bp

Protein-coding Genes

2969 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinA9199_03585Not AvailablePositive1401796 - 140223316727.6
hypothetical proteinA9199_03590Not AvailablePositive1402297 - 140273116012.8
arginyltransferaseA9199_03595Not AvailablePositive1402801 - 140362531171.9
hypothetical proteinA9199_03600Not AvailableNegative1403662 - 140550361857.0
acetolactate synthase 3 large subunitA9199_03605Not AvailablePositive1405998 - 140774063576.6
acetolactate synthase small subunitA9199_03610Not AvailablePositive1407753 - 140831620218.3
nucleoside hydrolaseA9199_03615Not AvailablePositive1408456 - 140939734300.4
acetyltransferaseA9199_03620Not AvailablePositive1409394 - 140984316053.5
hypothetical proteinA9199_03625Not AvailablePositive1409880 - 141125049802.9
urea abc transporter atp-binding subunit urteA9199_03630Not AvailableNegative1411305 - 141200025433.9

Displaying genes 1331 – 1340 of 2969 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

9 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000403(S)-acetoinC4H8O2Chemical structure of (S)-acetoinNot available
Average88.1051Da
Monoisotopic88.0524295Da
BASm0001697(S)-4,5-dihydroxypentane-2,3-dioneC5H8O4Chemical structure of (S)-4,5-dihydroxypentane-2,3-dioneNot available
Average132.1146Da
Monoisotopic132.042258744Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0003276S-(5-deoxy-D-ribos-5-yl)-L-homocysteineC9H17NO6SChemical structure of S-(5-deoxy-D-ribos-5-yl)-L-homocysteine15912-98-8
Average267.299Da
Monoisotopic267.077658Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0003432di-trans,octa-cis-undecaprenyl diphosphateC55H89O7P2Chemical structure of di-trans,octa-cis-undecaprenyl diphosphateNot available
Average924.259Da
Monoisotopic923.609999942Da
BASm00116522-oxooctanoateC8H13O3Chemical structure of 2-oxooctanoateNot available
Average157.19Da
Monoisotopic157.087017859Da

Displaying 1–9 of 9 metabolites

Health Effects

No health effects information available for this bacterium.