Limnohabitans sp. JirII-29

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Limnohabitans

Description

Limnohabitans sp. JirII-29 is characterized by a single replicon, indicating a streamlined genomic structure. This organism is cataloged under the accession number NESB00000000.1, which facilitates its identification and reference in biological databases. The genus Limnohabitans is known for its ecological role in freshwater environments, particularly in lakes and ponds. Members of this genus are often involved in the cycling of nutrients and can contribute to the maintenance of water quality. The presence of Limnohabitans sp. JirII-29 suggests it may play a specific role in the microbial communities within its habitat, potentially influencing biogeochemical processes. Given its single replicon, Limnohabitans sp. JirII-29 may exhibit certain metabolic efficiencies that could be beneficial in fluctuating environmental conditions typical of freshwater ecosystems. Streamlined genomes can often lead to faster growth rates and adaptability, which are crucial traits for survival in dynamic habitats. Overall, the study of Limnohabitans sp. JirII-29 enhances our understanding of microbial diversity and functionality in freshwater systems, underscoring the importance of such microorganisms in ecological balance and nutrient cycling.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusLimnohabitans
SpeciesLimnohabitans sp. JirII-29
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Limnohabitans sp. JirII-29 LimA-JirII-29-C31, whole genome shotgun

Gene Summary

Adenine Count

726266 bp

Thymine Count

730350 bp

Guanine Count

1008937 bp

Cytosine Count

1002557 bp

Genome Length

3468110 bp

Protein-coding Genes

3271 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
23s rrna (adenine(2030)-n(6))-methyltransferase rlmjB9Z39_13300Not AvailableNegative2704022 - 270490932538.2
50s ribosomal protein l13B9Z39_13305Not AvailablePositive2705122 - 270555015567.0
30s ribosomal protein s9B9Z39_13310Not AvailablePositive2705560 - 270595214199.2
iron-sulfur cluster insertion protein erpaB9Z39_13315Not AvailablePositive2706120 - 270648512993.2
anhydro-n-acetylmuramic acid kinaseB9Z39_13320Not AvailableNegative2706522 - 270763139138.7
peptidase m23B9Z39_13325Not AvailableNegative2707632 - 270889745319.3
tyrosine--trna ligaseB9Z39_13330Not AvailablePositive2709090 - 271032245059.3
cation diffusion facilitator family transporterB9Z39_13335Not AvailablePositive2710346 - 271127833548.9
d-tyrosyl-trna(tyr) deacylaseB9Z39_13340Not AvailablePositive2711275 - 271172115932.3
atp-dependent rna helicase dbpaB9Z39_13345Not AvailablePositive2711718 - 271312150282.7

Displaying genes 2641 – 2650 of 3324 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.