Rheinheimera sp. SA_1

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Chromatiales

Family

Chromatiaceae

Genus

Rheinheimera

Description

Rheinheimera sp. SA_1 is a Gram-negative bacterium characterized by its rod-shaped morphology. It possesses a single replicon, indicating a streamlined genomic structure typical of many bacteria within its classification. The strain is cataloged under the accession number LXWK00000000.1, which facilitates its identification and study within microbial databases. Gram-negative bacteria, such as Rheinheimera sp. SA_1, are known for their unique cell wall structure, which consists of a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. This structural feature often contributes to their resilience in various environments and may play a role in their interactions with other microorganisms and hosts. The ecological insights into Rheinheimera sp. SA_1 can be drawn from its classification within the Rheinheimera genus, which is typically associated with aquatic environments. Members of this genus are often involved in biogeochemical cycles and can contribute to the degradation of organic matter. Understanding the traits of Rheinheimera sp. SA_1 may shed light on its ecological role, particularly in nutrient cycling and potential applications in bioremediation processes. The specific traits of this bacterium underscore its importance in microbiological and ecological research.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderChromatiales
FamilyChromatiaceae
GenusRheinheimera
SpeciesRheinheimera sp. SA_1
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Rheinheimera sp. SA_1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rheinheimera sp. SA_1 Contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

1322923 bp

Thymine Count

1295598 bp

Guanine Count

1242736 bp

Cytosine Count

1302444 bp

Genome Length

5163701 bp

Protein-coding Genes

4187 genes

Non-Coding Genes

80 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinA5320_20575Not AvailablePositive58315 - 5916330379.8
hypothetical proteinA5320_20580Not AvailablePositive59166 - 5970820976.4
transcriptional regulatorA5320_20585O31834Positive59708 - 599418580.59
hypothetical proteinA5320_20590Not AvailableNegative60011 - 6064922541.0
glutamate 5-kinaseA5320_20595Q5QY57Positive61090 - 6220539356.8
glutamate-5-semialdehyde dehydrogenaseA5320_20600Q47UQ0Positive62202 - 6348545621.3
3-isopropylmalate dehydratase small subunitA5320_20605Q3IJS5Negative63962 - 6456422210.2
3-isopropylmalate dehydratase large subunitA5320_20610Q3IJS4Negative64561 - 6600050712.4
3-isopropylmalate dehydrogenaseA5320_20615Q3IJS3Negative66003 - 6707337936.4
2-isopropylmalate synthaseA5320_20620A1S2E0Negative67132 - 6868556491.2

Displaying genes 61 – 70 of 4267 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

242 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da

Displaying 1–10 of 242 metabolites

Health Effects

No health effects information available for this bacterium.