Silicimonas algicola str. DSM 103371

star/dumbbell/pleomorphicaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Silicimonas

Description

Silicimonas algicola strain DSM 103371 is a Gram-negative, non-motile bacterium characterized by its unique star or dumbbell shape and pleomorphic form. This microorganism is aerobic, requiring oxygen for growth and metabolic processes. It thrives optimally at a temperature of 25°C, placing it within the mesophilic temperature range, which is typical for many environmental bacteria. The genetic structure of Silicimonas algicola includes a single replicon, indicating a streamlined genomic organization that may contribute to its adaptability in various environments. The strain is cataloged under the accession number QGGV00000000.1, which provides a reference for further genomic studies and comparisons with other microbial species. In terms of ecological significance, the characteristics of Silicimonas algicola suggest its potential role in aquatic ecosystems, particularly in environments where organic matter decomposition and nutrient cycling are essential. The aerobic nature of this bacterium may facilitate the breakdown of organic compounds in oxygen-rich environments, hence contributing to the overall health and balance of its ecological niche. Understanding the traits and behaviors of Silicimonas algicola could provide insights into the microbial dynamics in marine habitats and their influence on nutrient availability and environmental stability.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusSilicimonas
SpeciesSilicimonas algicola
StrainDSM 103371

Profile

Physiology
Gram staining propertiesGram-negative
Shapestar/dumbbell/pleomorphic
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature25
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Silicimonas algicola strain DSM 103371 Ga0215722_129, whole genome

Gene Summary

Adenine Count

750759 bp

Thymine Count

756120 bp

Guanine Count

1425462 bp

Cytosine Count

1405196 bp

Genome Length

4337735 bp

Protein-coding Genes

4319 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
uncharacterized protein ydei (yjbr/cyay-like superfamily)C8D95_10660Not AvailablePositive2739383 - 273997021457.5
3-methylfumaryl-coa hydratase/itaconyl-coa hydratase/mesaconyl-c4 coa hydrataseC8D95_10661Not AvailablePositive2740007 - 274078628890.7
glycine/d-amino acid oxidase-like deaminating enzymeC8D95_10662Not AvailableNegative2740790 - 274179435747.4
trna u34 5-methylaminomethyl-2-thiouridine-forming methyltransferase mnmcC8D95_10663Not AvailablePositive2741856 - 274252724096.5
drug/metabolite transporter (dmt)-like permeaseC8D95_10664Not AvailablePositive2742560 - 274340830346.6
phospholipid transport system substrate-binding proteinC8D95_10665Not AvailableNegative2743405 - 274401321831.4
phospholipid-binding lipoprotein mlaaC8D95_10666Not AvailableNegative2744006 - 274476727069.3
enamine deaminase rida (yjgf/yer057c/uk114 family)C8D95_10667Not AvailablePositive2744938 - 274539915626.9
glycerophosphoryl diester phosphodiesteraseC8D95_10668Not AvailablePositive2745396 - 274616327493.5
hypothetical proteinC8D95_10669Not AvailablePositive2746195 - 274738244304.8

Displaying genes 2761 – 2770 of 4372 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.