Candidatus Thiodiazotropha endoloripes

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Chromatiales

Family

Sedimenticolaceae

Genus

Candidatus Thiodiazotropha

Description

Candidatus Thiodiazotropha endoloripes is characterized by a single replicon, which is a notable feature among bacteria as it indicates a streamlined genomic structure. The complete genome of this organism is accessible under the accession number LVJZ00000000.1. This information allows for further investigation into its genetic makeup and potential functional capabilities. As a member of the microbiological community, Candidatus Thiodiazotropha endoloripes may play a role in ecological processes, particularly those involving nitrogen cycling and sulfur metabolism. While specific metabolic pathways and ecological interactions are not detailed, the presence of such bacteria often suggests involvement in biogeochemical cycles that are vital for maintaining ecosystem balance. The unique traits of Candidatus Thiodiazotropha endoloripes, including its genomic organization, highlight its potential significance in environmental microbiology and its contributions to nutrient cycling processes. Understanding its ecological role could provide insights into microbial diversity and functional dynamics within its habitat.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderChromatiales
FamilySedimenticolaceae
GenusCandidatus Thiodiazotropha
SpeciesCandidatus Thiodiazotropha endoloripes
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Candidatus Thiodiazotropha endoloripes isolate G_D

Gene Summary

Adenine Count

1075684 bp

Thymine Count

1085881 bp

Guanine Count

1169581 bp

Cytosine Count

1171932 bp

Genome Length

4503078 bp

Protein-coding Genes

3952 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinA3196_14455Not AvailableNegative3182601 - 31828017837.4
nitrogenase cofactor biosynthesis protein nifbA3196_14460P11067Negative3183102 - 318461055356.0
nif-specific transcriptional activator nifaA3196_14465P09570Negative3184801 - 318633656874.3
nitrogen fixation negative regulator niflA3196_14470P30663Negative3186363 - 318800360698.1
electron transport complex subunit rsxaA3196_14475Q5P539Positive3188343 - 318892120608.2
electron transporter rnfbA3196_14480A5F2R3Positive3189053 - 318958318325.4
electron transporter rnfcA3196_14485Q52716Positive3189586 - 319109154162.0
electron transporter rnfdA3196_14490A1WTR8Positive3191088 - 319217638812.9
electron transporter rnfgA3196_14495P97054Positive3192173 - 319284424584.2
electron transport complex subunit rsxeA3196_14500P97055Positive3192852 - 319354124867.2

Displaying genes 2881 – 2890 of 4005 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

173 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000430hercynineC9H15N3O2Chemical structure of hercynineNot available
Average197.238Da
Monoisotopic197.1164267Da
BASm0000542HgHgChemical structure of HgNot available
Average200.59Da
Monoisotopic201.9706256Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm00006473-hydroxypropanoateC3H5O3Chemical structure of 3-hydroxypropanoateNot available
Average89.071Da
Monoisotopic89.0244176Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da

Displaying 1–10 of 173 metabolites

Health Effects

No health effects information available for this bacterium.