Syntrophus sp. PtaU1.Bin005

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Syntrophia

Order

Syntrophales

Family

Syntrophaceae

Genus

Syntrophus

Description

Syntrophus sp. PtaU1.Bin005 is a Gram-negative bacterium characterized by its rod-shaped morphology. This organism is motile, possessing flagella, which likely aids in its movement within various environments. The genome of Syntrophus sp. PtaU1.Bin005 contains a single replicon, indicating a streamlined genetic structure that may be advantageous for its metabolic functions. The accession number for Syntrophus sp. PtaU1.Bin005 is MVRU00000000.1, which can be used for further genomic and taxonomic studies. This bacterium is part of a group known for their syntrophic metabolism, where it often plays a role in the degradation of organic compounds in anaerobic environments, typically in association with other microorganisms. In ecological contexts, Syntrophus sp. species are often involved in the process of syntrophy, where they collaborate with methanogens and other microbial communities to facilitate the breakdown of complex organic materials. This mutualistic relationship is crucial in anaerobic digestion processes and impacts biogeochemical cycles, particularly in environments such as wetlands and sediments. Understanding the specific traits and behaviors of Syntrophus sp. PtaU1.Bin005 enhances our knowledge of its ecological role in nutrient cycling and organic matter degradation.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassSyntrophia
OrderSyntrophales
FamilySyntrophaceae
GenusSyntrophus
SpeciesSyntrophus sp. PtaU1.Bin005
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Syntrophus sp. PtaU1.Bin005
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Syntrophus sp. PtaU1.Bin005 A4E70_contig000165, whole genome

Gene Summary

Adenine Count

652622 bp

Thymine Count

651045 bp

Guanine Count

796703 bp

Cytosine Count

803794 bp

Genome Length

2904164 bp

Protein-coding Genes

2610 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aminodeoxychorismate/anthranilate synthase component 2A4E70_00548Not AvailableNegative582282 - 58290823097.9
anthranilate synthase component 1A4E70_00549Not AvailableNegative582944 - 58456660185.4
dna integrity scanning protein disaA4E70_00550Not AvailablePositive584915 - 58642056144.4
magnesium transport protein coraA4E70_00551Not AvailablePositive586407 - 58747441108.1
hypothetical proteinA4E70_00552Not AvailableNegative587559 - 5878169307.33
3-succinoylsemialdehyde-pyridine dehydrogenaseA4E70_00553Not AvailableNegative587839 - 58929652387.7
aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit bA4E70_00554Not AvailableNegative589363 - 59079952539.1
glutamyl-trna(gln) amidotransferase subunit aA4E70_00555Not AvailableNegative590802 - 59200142382.3
aspartate--trna ligaseA4E70_00556Not AvailableNegative592016 - 59413378351.9
putative abc transporter atp-binding protein ylmaA4E70_00557Not AvailableNegative594277 - 59574654226.3

Displaying genes 551 – 560 of 2666 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.