Syntrophus sp. PtaU1.Bin005

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Syntrophia

Order

Syntrophales

Family

Syntrophaceae

Genus

Syntrophus

Description

Syntrophus sp. PtaU1.Bin005 is a Gram-negative bacterium characterized by its rod-shaped morphology. This organism is motile, possessing flagella, which likely aids in its movement within various environments. The genome of Syntrophus sp. PtaU1.Bin005 contains a single replicon, indicating a streamlined genetic structure that may be advantageous for its metabolic functions. The accession number for Syntrophus sp. PtaU1.Bin005 is MVRU00000000.1, which can be used for further genomic and taxonomic studies. This bacterium is part of a group known for their syntrophic metabolism, where it often plays a role in the degradation of organic compounds in anaerobic environments, typically in association with other microorganisms. In ecological contexts, Syntrophus sp. species are often involved in the process of syntrophy, where they collaborate with methanogens and other microbial communities to facilitate the breakdown of complex organic materials. This mutualistic relationship is crucial in anaerobic digestion processes and impacts biogeochemical cycles, particularly in environments such as wetlands and sediments. Understanding the specific traits and behaviors of Syntrophus sp. PtaU1.Bin005 enhances our knowledge of its ecological role in nutrient cycling and organic matter degradation.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassSyntrophia
OrderSyntrophales
FamilySyntrophaceae
GenusSyntrophus
SpeciesSyntrophus sp. PtaU1.Bin005
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Syntrophus sp. PtaU1.Bin005
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Syntrophus sp. PtaU1.Bin005 A4E70_contig000165, whole genome

Gene Summary

Adenine Count

652622 bp

Thymine Count

651045 bp

Guanine Count

796703 bp

Cytosine Count

803794 bp

Genome Length

2904164 bp

Protein-coding Genes

2610 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ribonuclease dA4E70_01749Not AvailablePositive1908393 - 190926233469.3
cyclic di-gmp phosphodiesterase response regulator rpfgA4E70_01750Not AvailablePositive1909419 - 191042337780.6
trna pseudouridine synthase aA4E70_01751Not AvailableNegative1910512 - 191139032683.3
hypothetical proteinA4E70_01752Not AvailableNegative1911518 - 191223726812.4
orotate phosphoribosyltransferaseA4E70_01753Not AvailableNegative1912336 - 191292320883.2
methionine synthaseA4E70_01754Not AvailableNegative1912989 - 191542487023.8
putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing proteinA4E70_01755Not AvailablePositive1916039 - 191649417187.5
vitamin b12 dependent methionine synthase, activation domainA4E70_01756Not AvailableNegative1916540 - 191720224541.7
rna 3'-terminal phosphate cyclaseA4E70_01757Not AvailableNegative1917219 - 191829839205.5
2,3-dimethylmalate dehydratase small subunitA4E70_01758Not AvailableNegative1918351 - 191884817957.6

Displaying genes 1751 – 1760 of 2666 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.