Sphingorhabdus sp. M41

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingorhabdaceae

Genus

Sphingorhabdus

Description

Sphingorhabdus sp. M41 is characterized by having a single replicon, which suggests a streamlined genomic organization. The organism is cataloged under the accession number NZ_CP014545.1, indicating its presence in genomic databases. Sphingorhabdus sp. belongs to a genus that is typically associated with various environments, often contributing to the degradation of complex organic compounds. While specific ecological roles of Sphingorhabdus sp. M41 are not detailed, members of the Sphingorhabdus genus are known for their potential in bioremediation processes and organic matter decomposition. The presence of a single replicon may confer certain advantages to Sphingorhabdus sp. M41, including a simplified replication process and potentially a faster response to environmental changes. This trait can be advantageous in various ecological contexts, allowing for efficient adaptation and survival in diverse habitats. In summary, Sphingorhabdus sp. M41, with its single replicon and its classification under the accession NZ_CP014545.1, exemplifies traits that may support its ecological roles, particularly in organic matter breakdown and bioremediation efforts. Further studies would be beneficial to clarify its specific functions and contributions to its ecosystem.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingorhabdaceae
GenusSphingorhabdus
SpeciesSphingorhabdus sp. M41
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingorhabdus sp. M41 chromosome, complete genome.

Gene Summary

Adenine Count

725557 bp

Thymine Count

719814 bp

Guanine Count

947308 bp

Cytosine Count

946842 bp

Genome Length

3339521 bp

Protein-coding Genes

3134 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
l,d-transpeptidase family proteinAZE99_RS09755Not AvailableNegative2045828 - 204700043588.8
murein l,d-transpeptidase catalytic domain family proteinAZE99_RS09760Not AvailablePositive2047088 - 204772922864.4
host attachment proteinAZE99_RS09765Not AvailablePositive2047957 - 204840016188.5
abc transporter atp-binding proteinAZE99_RS09770Not AvailablePositive2048400 - 204914326577.7
abc transporter permeaseAZE99_RS09775Not AvailablePositive2049137 - 205152186302.1
efflux rnd transporter periplasmic adaptor subunitAZE99_RS09780Not AvailablePositive2051526 - 205274643768.8
gnat family n-acetyltransferaseAZE99_RS09785Not AvailableNegative2052721 - 205332022175.2
acetyl-coa hydrolase/transferase family proteinAZE99_RS09790Not AvailablePositive2053582 - 205488046727.1
lps export abc transporter atp-binding proteinAZE99_RS09795Not AvailablePositive2055032 - 205581128810.0
universal stress proteinAZE99_RS09800Not AvailablePositive2055941 - 205675329339.0

Displaying genes 1991 – 2000 of 3203 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.