Sphingorhabdus sp. M41

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingorhabdaceae

Genus

Sphingorhabdus

Description

Sphingorhabdus sp. M41 is characterized by having a single replicon, which suggests a streamlined genomic organization. The organism is cataloged under the accession number NZ_CP014545.1, indicating its presence in genomic databases. Sphingorhabdus sp. belongs to a genus that is typically associated with various environments, often contributing to the degradation of complex organic compounds. While specific ecological roles of Sphingorhabdus sp. M41 are not detailed, members of the Sphingorhabdus genus are known for their potential in bioremediation processes and organic matter decomposition. The presence of a single replicon may confer certain advantages to Sphingorhabdus sp. M41, including a simplified replication process and potentially a faster response to environmental changes. This trait can be advantageous in various ecological contexts, allowing for efficient adaptation and survival in diverse habitats. In summary, Sphingorhabdus sp. M41, with its single replicon and its classification under the accession NZ_CP014545.1, exemplifies traits that may support its ecological roles, particularly in organic matter breakdown and bioremediation efforts. Further studies would be beneficial to clarify its specific functions and contributions to its ecosystem.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingorhabdaceae
GenusSphingorhabdus
SpeciesSphingorhabdus sp. M41
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingorhabdus sp. M41 chromosome, complete genome.

Gene Summary

Adenine Count

725557 bp

Thymine Count

719814 bp

Guanine Count

947308 bp

Cytosine Count

946842 bp

Genome Length

3339521 bp

Protein-coding Genes

3134 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glycosyltransferase family 1 proteinAZE99_RS09660Not AvailableNegative2030215 - 203127939608.4
udp-2,3-diacylglucosamine diphosphataseAZE99_RS09665Not AvailableNegative2031276 - 203219035126.2
nudix hydrolaseAZE99_RS09670Not AvailableNegative2032284 - 203270315663.3
nad(p)h-quinone oxidoreductaseAZE99_RS09675Not AvailableNegative2032709 - 203371935363.2
duf1192 domain-containing proteinAZE99_RS09680Not AvailablePositive2033820 - 20340177355.69
atp-dependent clp protease atp-binding subunit clpaAZE99_RS09685Not AvailablePositive2034287 - 203660584997.3
ethd domain-containing proteinAZE99_RS16280Not AvailableNegative2036715 - 203705912995.4
hypothetical proteinAZE99_RS16285Not AvailablePositive2037224 - 20373765660.84
yafy family proteinAZE99_RS09695Not AvailablePositive2037376 - 203809526989.3
glutathione s-transferase family proteinAZE99_RS09700Not AvailablePositive2038097 - 203871122545.7

Displaying genes 1971 – 1980 of 3203 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.