Sphingopyxis sp. RIFCSPHIGHO2_12_FULL_65_19

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Sphingopyxis sp. RIFCSPHIGHO2_12_FULL_65_19 is characterized as a rod-shaped bacterium. This morphological feature is significant as it often influences the organism's motility and habitat preferences, which are critical for understanding its ecological role. The strain possesses a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability and efficiency in environmental settings. This trait can be advantageous for survival in various habitats, allowing for rapid replication and response to changes in the surrounding conditions. The strain is cataloged under the accession number MIAM00000000.1, which provides a reference point for researchers looking to investigate its genetic, functional, or ecological properties. Accessions are essential for the identification and retrieval of genomic data, supporting further studies into the organism's biology. In summary, the rod shape and single replicon of Sphingopyxis sp. RIFCSPHIGHO2_12_FULL_65_19 suggest potential adaptations for life in diverse environments. These traits may enable the bacterium to occupy specific niches within ecosystems, influencing nutrient cycling and interaction with other microorganisms. Understanding these characteristics can contribute to broader insights into microbial ecology and the roles that such bacteria play in their habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis sp. RIFCSPHIGHO2_12_FULL_65_19
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Sphingopyxis sp. RIFCSPHIGHO2_12_FULL_65_19

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
50s ribosomal protein l19A3E77_13375Not AvailableNegative1236203 - 123658013940.8
trna (guanosine(37)-n1)-methyltransferase trmdA3E77_13380Not AvailableNegative1236586 - 123732326550.8
lysr family transcriptional regulatorA3E77_13385Not AvailableNegative1237320 - 123824334278.1
penicillin-binding proteinA3E77_13390Not AvailableNegative1238572 - 124008953955.4
16s rrna processing protein rimmA3E77_13395Not AvailableNegative1240215 - 124070917260.6
30s ribosomal protein s16A3E77_13400Not AvailableNegative1240713 - 124136022080.1
signal recognition particle proteinA3E77_13405Not AvailableNegative1241401 - 124285250757.7
diguanylate cyclaseA3E77_13410Not AvailablePositive1243127 - 124475859030.2
diaminopimelate epimeraseA3E77_13415Not AvailablePositive1244810 - 124561628495.1
trna (n(6)-l-threonylcarbamoyladenosine(37)-c(2))- methylthiotransferase mtabA3E77_13420Not AvailablePositive1245628 - 124696547119.0

Displaying genes 1191 – 1200 of 3567 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.