Sphingopyxis sp. RIFCSPHIGHO2_12_FULL_65_19

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Sphingopyxis sp. RIFCSPHIGHO2_12_FULL_65_19 is characterized as a rod-shaped bacterium. This morphological feature is significant as it often influences the organism's motility and habitat preferences, which are critical for understanding its ecological role. The strain possesses a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability and efficiency in environmental settings. This trait can be advantageous for survival in various habitats, allowing for rapid replication and response to changes in the surrounding conditions. The strain is cataloged under the accession number MIAM00000000.1, which provides a reference point for researchers looking to investigate its genetic, functional, or ecological properties. Accessions are essential for the identification and retrieval of genomic data, supporting further studies into the organism's biology. In summary, the rod shape and single replicon of Sphingopyxis sp. RIFCSPHIGHO2_12_FULL_65_19 suggest potential adaptations for life in diverse environments. These traits may enable the bacterium to occupy specific niches within ecosystems, influencing nutrient cycling and interaction with other microorganisms. Understanding these characteristics can contribute to broader insights into microbial ecology and the roles that such bacteria play in their habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis sp. RIFCSPHIGHO2_12_FULL_65_19
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Sphingopyxis sp. RIFCSPHIGHO2_12_FULL_65_19

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
short-chain dehydrogenaseA3E77_08710Not AvailableNegative1078485 - 107930327867.2
card family transcriptional regulatorA3E77_08715Not AvailablePositive1079617 - 108014419972.0
trna pseudouridine(38-40) synthase truaA3E77_08720Not AvailableNegative1080329 - 108106926951.2
methionyl-trna formyltransferaseA3E77_08725Not AvailableNegative1081183 - 108210332346.2
recombination protein recrA3E77_08730Not AvailablePositive1082281 - 108287721355.9
peptide deformylaseA3E77_08735Not AvailablePositive1082909 - 108344220107.2
nucleotide exchange factor grpeA3E77_08740Not AvailableNegative1083569 - 108411419418.9
heat-inducible transcriptional repressor hrcaA3E77_08745Not AvailableNegative1084128 - 108517136768.2
ribonuclease phA3E77_08750Not AvailablePositive1085285 - 108600125526.6
non-canonical purine ntp pyrophosphatase, rdgb/ham1 familyA3E77_08755Not AvailablePositive1086099 - 108672522213.4

Displaying genes 1011 – 1020 of 3567 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.