Pseudomonadales bacterium RIFCSPHIGHO2_01_FULL_64_12

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Genus

Description

The Pseudomonadales bacterium designated as RIFCSPHIGHO2_01_FULL_64_12 is characterized by a single replicon, which suggests a streamlined genomic structure. This trait may contribute to its adaptability and efficiency in various environments. The organism is associated with the accession MHZJ00000000.1, which serves as its reference in sequence databases. Pseudomonadales, a diverse order within the class Gammaproteobacteria, are known for their metabolic versatility and ability to thrive in a range of ecological niches. Bacteria within this order often play significant roles in biogeochemical cycles, particularly in the degradation of organic compounds and the cycling of nutrients. This particular strain may exhibit similar capabilities, although specific metabolic pathways and ecological roles have not been detailed. The presence of a single replicon might indicate that RIFCSPHIGHO2_01_FULL_64_12 has a simplified genomic organization, potentially allowing for rapid growth and adaptation to changing environmental conditions. This trait can be advantageous in environments where resources are limited or fluctuating. In summary, while specific functional traits of RIFCSPHIGHO2_01_FULL_64_12 remain undefined, its classification within the Pseudomonadales order and its genomic simplicity suggest that it may be equipped for diverse ecological interactions, possibly contributing to nutrient cycling and organic matter decomposition in its habitat.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Pseudomonadales bacterium RIFCSPHIGHO2_01_FULL_64_12

Gene Summary

Adenine Count

747772 bp

Thymine Count

738750 bp

Guanine Count

1325887 bp

Cytosine Count

1334708 bp

Genome Length

4165094 bp

Protein-coding Genes

3429 genes

Non-Coding Genes

44 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pyridoxal-dependent decarboxylaseA2883_15140Not AvailablePositive329984 - 33150755558.3
peptide chain release factor 1A2883_18500Not AvailableNegative332561 - 33364340217.2
glutamyl-trna reductaseA2883_18505Not AvailableNegative333640 - 33490846011.4
hypothetical proteinA2883_18510Not AvailablePositive335109 - 33683664248.8
lipoprotein localization factor lolbA2883_18515Not AvailablePositive336840 - 33746022784.2
4-(cytidine 5'-diphospho)-2-c-methyl-d-erythritol kinaseA2883_18520Not AvailablePositive337461 - 33832131078.5
Trna-glnNot AvailableNot AvailablePositive338341 - 338415Not Available
Trna-glnNot AvailableNot AvailablePositive338463 - 338537Not Available
ribose-phosphate pyrophosphokinaseA2883_18535Not AvailablePositive338616 - 33955734094.3
50s ribosomal protein l25/general stress protein ctcA2883_18540Not AvailablePositive339677 - 34029422101.6

Displaying genes 301 – 310 of 3473 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

5 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00029834-CDP-2-C-methyl-D-erythritolC14H23N3O14P2Chemical structure of 4-CDP-2-C-methyl-D-erythritolNot available
Average519.294Da
Monoisotopic519.0666236Da
BASm00030584-CDP-2-C-methyl-D-erythritol 2-phosphateC14H22N3O17P3Chemical structure of 4-CDP-2-C-methyl-D-erythritol 2-phosphateNot available
Average597.257Da
Monoisotopic597.0184016Da
BASm00034972-C-methyl-D-erythritol 2,4-cyclic diphosphateC5H10O9P2Chemical structure of 2-C-methyl-D-erythritol 2,4-cyclic diphosphate143488-44-2
Average276.075Da
Monoisotopic275.9800049Da
BASm00050533',3'-c-di-AMPC20H22N10O12P2Chemical structure of 3',3'-c-di-AMPNot available
Average656.403Da
Monoisotopic656.0904873Da

Displaying 1–5 of 5 metabolites

Health Effects

No health effects information available for this bacterium.