Synechococcus sp. MIT S9504

Gram-negative

Kingdom

Bacillati

Phylum

Cyanobacteriota

Class

Cyanophyceae

Order

Synechococcales

Family

Synechococcaceae

Genus

Synechococcus

Description

Synechococcus sp. MIT S9504 is a Gram-negative cyanobacterium characterized by its possession of flagella, which facilitate motility. This species has a single replicon, indicating a streamlined genomic organization that is typical for many cyanobacteria. The strain is cataloged under the accession number LVHT00000000.1, which provides a reference for genomic data and further studies. Cyanobacteria, including Synechococcus sp., are essential components of aquatic ecosystems. They play a crucial role in primary production and contribute significantly to the global carbon cycle through photosynthesis. Their ability to thrive in various environmental conditions makes them important for understanding ecological dynamics in both marine and freshwater habitats. The presence of flagella in Synechococcus sp. MIT S9504 may enhance its adaptability by allowing for movement towards optimal light conditions or nutrient availability, which is critical for survival and growth in competitive environments. This motility can influence the organism's interactions within microbial communities, potentially affecting nutrient cycling and the overall productivity of the ecosystems they inhabit. In summary, the traits of Synechococcus sp. MIT S9504 highlight its ecological significance as a motile, Gram-negative cyanobacterium with a singular genomic structure, contributing to its adaptability and role in aquatic environments.

Taxonomy

KingdomBacillati
PhylumCyanobacteriota
ClassCyanophyceae
OrderSynechococcales
FamilySynechococcaceae
GenusSynechococcus
SpeciesSynechococcus sp. MIT S9504
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Synechococcus sp. MIT S9504
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Synechococcus sp. MIT S9504 MITS9504_contig000034, whole genome

Gene Summary

Adenine Count

684111 bp

Thymine Count

691719 bp

Guanine Count

855669 bp

Cytosine Count

855727 bp

Genome Length

3087293 bp

Protein-coding Genes

3506 genes

Non-Coding Genes

44 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aliphatic amidase expression-regulating proteinMITS9504_02679Not AvailableNegative2305075 - 230637946852.2
urease accessory protein uregMITS9504_02680Q3AGD6Negative2306599 - 230721622039.4
urease accessory protein urefMITS9504_02681B0JS46Negative2307216 - 230788724242.3
urease accessory protein ureeMITS9504_02682O87398Negative2307884 - 230837217624.6
urease accessory protein uredMITS9504_02683O87399Positive2308472 - 230943135618.2
urease subunit gammaMITS9504_02684Q3AGD2Positive2309450 - 230975211268.8
urease subunit betaMITS9504_02685Q3AGD1Positive2309763 - 231008311220.3
urease subunit alphaMITS9504_02686Q3AGD0Positive2310087 - 231179660549.5
carbamoyl-phosphate synthase small chainMITS9504_02687Not AvailablePositive2311793 - 231254827742.4
hypothetical proteinMITS9504_02688Not AvailablePositive2312717 - 23128846596.96

Displaying genes 2681 – 2690 of 3550 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

194 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000430hercynineC9H15N3O2Chemical structure of hercynineNot available
Average197.238Da
Monoisotopic197.1164267Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da
BASm00005992,5-dihydroxypyridineC5H5NO2Chemical structure of 2,5-dihydroxypyridineNot available
Average111.1Da
Monoisotopic111.0320284Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da

Displaying 1–10 of 194 metabolites

Health Effects

No health effects information available for this bacterium.