Collimonas sp. OK607

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Oxalobacteraceae

Genus

Collimonas

Description

Collimonas sp. OK607 is a unique microbial organism characterized by having a single replicon. This trait suggests a streamlined genetic organization, which may influence its adaptability and replication efficiency in various environments. The strain is cataloged under the accession number FOKF00000000.1, providing a reference for researchers interested in studying its genetic makeup and functional capabilities. Collimonas species are known for their ecological role in soil environments, particularly in the degradation of organic matter. This trait aligns with the broader ecological function of Collimonas, as they are often involved in nutrient cycling and contribute to soil health. Their ability to thrive in diverse conditions may make them important players in maintaining the balance of microbial communities in soil ecosystems. The single replicon feature of Collimonas sp. OK607 could provide insights into its evolutionary adaptations and metabolic pathways. Understanding these traits could further elucidate how this organism interacts with its environment, particularly in nutrient-poor conditions where it may utilize unique strategies for survival and growth. Researchers studying Collimonas sp. OK607 may gain valuable information about its role in soil microbiomes and its potential applications in bioremediation or sustainable agriculture practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusCollimonas
SpeciesCollimonas sp. OK607
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Collimonas sp. OK607 genome assembly, contig: Ga0070535_190, whole

Gene Summary

Adenine Count

1184390 bp

Thymine Count

1179281 bp

Guanine Count

1513161 bp

Cytosine Count

1497706 bp

Genome Length

5374538 bp

Protein-coding Genes

4983 genes

Non-Coding Genes

128 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
formate dehydrogenase (quinone-dependent) catalytic subunitSAMN04515620_103121Not AvailableNegative831088 - 83167821426.7
3-deoxy-d-manno-oct-2-ulosonic acid (kdo) hydroxylaseSAMN04515620_103122Not AvailablePositive831888 - 83276933057.3
3-deoxy-d-manno-octulosonic-acid transferaseSAMN04515620_103123Not AvailablePositive832766 - 83410348574.2
uncharacterized sam-binding protein ycdf, duf218 familySAMN04515620_103124Not AvailablePositive834115 - 83488527821.1
lipopolysaccharide biosynthesis protein, lps:glycosyltransferaseSAMN04515620_103125Not AvailablePositive835132 - 83613638187.2
o-antigen ligaseSAMN04515620_103126Not AvailablePositive836246 - 83752947765.5
udp-galactose 4-epimeraseSAMN04515620_103127Not AvailableNegative837604 - 83863837730.9
outer membrane protein, multidrug efflux systemSAMN04515620_103128Not AvailableNegative838781 - 84022351982.5
multidrug efflux pumpSAMN04515620_103129Not AvailableNegative840216 - 843368112038.0
membrane fusion protein, multidrug efflux systemSAMN04515620_103130Not AvailableNegative843380 - 84460642277.3

Displaying genes 881 – 890 of 5111 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.