Collimonas sp. OK607

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Oxalobacteraceae

Genus

Collimonas

Description

Collimonas sp. OK607 is a unique microbial organism characterized by having a single replicon. This trait suggests a streamlined genetic organization, which may influence its adaptability and replication efficiency in various environments. The strain is cataloged under the accession number FOKF00000000.1, providing a reference for researchers interested in studying its genetic makeup and functional capabilities. Collimonas species are known for their ecological role in soil environments, particularly in the degradation of organic matter. This trait aligns with the broader ecological function of Collimonas, as they are often involved in nutrient cycling and contribute to soil health. Their ability to thrive in diverse conditions may make them important players in maintaining the balance of microbial communities in soil ecosystems. The single replicon feature of Collimonas sp. OK607 could provide insights into its evolutionary adaptations and metabolic pathways. Understanding these traits could further elucidate how this organism interacts with its environment, particularly in nutrient-poor conditions where it may utilize unique strategies for survival and growth. Researchers studying Collimonas sp. OK607 may gain valuable information about its role in soil microbiomes and its potential applications in bioremediation or sustainable agriculture practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusCollimonas
SpeciesCollimonas sp. OK607
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Collimonas sp. OK607 genome assembly, contig: Ga0070535_190, whole

Gene Summary

Adenine Count

1184390 bp

Thymine Count

1179281 bp

Guanine Count

1513161 bp

Cytosine Count

1497706 bp

Genome Length

5374538 bp

Protein-coding Genes

4983 genes

Non-Coding Genes

128 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
spermidine synthaseSAMN04515620_102199Not AvailableNegative565119 - 56597031418.8
g/u mismatch-specific uracil-dna glycosylaseSAMN04515620_102200Not AvailableNegative566099 - 56659318165.8
camp-binding domain of crp or a regulatory subunit of camp-dependent protein kinasesSAMN04515620_102201Not AvailableNegative566612 - 56729525278.7
long-chain acyl-coa synthetaseSAMN04515620_102202Not AvailablePositive567507 - 56947473168.1
branched-chain amino acid transport system atp-binding proteinSAMN04515620_102203Not AvailablePositive569479 - 57036332505.4
amino acid/amide abc transporter membrane protein 1, haat familySAMN04515620_102204Not AvailablePositive570377 - 57129132504.2
amino acid/amide abc transporter membrane protein 2, haat familySAMN04515620_102205Not AvailablePositive571339 - 57241539042.1
amino acid/amide abc transporter substrate-binding protein, haat family (tc 3.a.1.4.-)SAMN04515620_102206Not AvailablePositive572476 - 57379847597.3
amino acid/amide abc transporter atp-binding protein 2, haat familySAMN04515620_102207Not AvailablePositive573861 - 57466429811.2
phenylacetate-coa ligaseSAMN04515620_102208Not AvailablePositive574726 - 57598545375.7

Displaying genes 641 – 650 of 5111 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.