Collimonas sp. OK607

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Oxalobacteraceae

Genus

Collimonas

Description

Collimonas sp. OK607 is a unique microbial organism characterized by having a single replicon. This trait suggests a streamlined genetic organization, which may influence its adaptability and replication efficiency in various environments. The strain is cataloged under the accession number FOKF00000000.1, providing a reference for researchers interested in studying its genetic makeup and functional capabilities. Collimonas species are known for their ecological role in soil environments, particularly in the degradation of organic matter. This trait aligns with the broader ecological function of Collimonas, as they are often involved in nutrient cycling and contribute to soil health. Their ability to thrive in diverse conditions may make them important players in maintaining the balance of microbial communities in soil ecosystems. The single replicon feature of Collimonas sp. OK607 could provide insights into its evolutionary adaptations and metabolic pathways. Understanding these traits could further elucidate how this organism interacts with its environment, particularly in nutrient-poor conditions where it may utilize unique strategies for survival and growth. Researchers studying Collimonas sp. OK607 may gain valuable information about its role in soil microbiomes and its potential applications in bioremediation or sustainable agriculture practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusCollimonas
SpeciesCollimonas sp. OK607
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Collimonas sp. OK607 genome assembly, contig: Ga0070535_190, whole

Gene Summary

Adenine Count

1184390 bp

Thymine Count

1179281 bp

Guanine Count

1513161 bp

Cytosine Count

1497706 bp

Genome Length

5374538 bp

Protein-coding Genes

4983 genes

Non-Coding Genes

128 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
outer membrane protein (porin)SAMN04515620_1019Not AvailablePositive8108 - 915137000.4
lysr family transcriptional regulator, nitrogen assimilation regulatory proteinSAMN04515620_10110Not AvailableNegative9164 - 1008734187.6
predicted metal-dependent hydrolase, tim-barrel foldSAMN04515620_10111Not AvailablePositive10235 - 1110431541.9
3-hydroxyisobutyrate dehydrogenaseSAMN04515620_10112Not AvailableNegative11152 - 1206031853.4
4-carboxy-4-hydroxy-2-oxoadipate aldolaseSAMN04515620_10113Not AvailableNegative12076 - 1276523960.1
4-oxalomesaconate hydrataseSAMN04515620_10114Not AvailableNegative12775 - 1381538841.6
4-oxalomesaconate tautomeraseSAMN04515620_10115Not AvailableNegative13817 - 1495039371.8
lysr family transcriptional regulator, regulator for genes of the gallate degradation pathwaySAMN04515620_10116Not AvailablePositive15089 - 1629743120.9
hypothetical proteinSAMN04515620_10117Not AvailableNegative16653 - 1757033601.3
hypothetical proteinSAMN04515620_10118Not AvailableNegative17567 - 1802216420.3

Displaying genes 121 – 130 of 5111 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.