Idiomarina sp. T82-3

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Idiomarinaceae

Genus

Idiomarina

Description

Idiomarina sp. T82-3 is a notable microorganism characterized by the presence of flagella, which indicates its capability for motility. This trait allows the organism to navigate its environment, potentially aiding in nutrient acquisition and colonization of specific niches. Genomically, Idiomarina sp. T82-3 possesses a single replicon, which can suggest a simpler genetic organization compared to organisms with multiple replicons. This may influence the organism's replication process and overall genomic stability. The organism is cataloged under the accession number LSBQ00000000.1, which provides a reference point for genomic studies and further research. Understanding the genetic makeup accessible through this accession can contribute to insights into the organism's metabolic pathways and ecological roles. Biologically, Idiomarina sp. T82-3's motility, indicated by flagella presence, suggests adaptations that could be significant in various ecological contexts, such as aquatic environments where movement toward nutrient sources or away from harmful conditions is vital for survival. This motility, combined with its genomic features, positions Idiomarina sp. T82-3 as an interesting subject for further exploration in microbial ecology and evolutionary biology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyIdiomarinaceae
GenusIdiomarina
SpeciesIdiomarina sp. T82-3
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Idiomarina sp. T82-3 scaffold_942, whole genome shotgun

Gene Summary

Adenine Count

714769 bp

Thymine Count

721150 bp

Guanine Count

648568 bp

Cytosine Count

639169 bp

Genome Length

2723656 bp

Protein-coding Genes

2554 genes

Non-Coding Genes

48 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
udp-glucose 4-epimeraseAWU56_11P55180Negative14643 - 1566537506.2
udp-glucose 6-dehydrogenaseAWU56_12O33952Negative15740 - 1690643575.7
hypothetical proteinAWU56_13P32689Negative16926 - 1907982399.6
uncharacterized proteinAWU56_14Not AvailableNegative19076 - 1993031705.9
putative lipoproteinAWU56_15Not AvailableNegative19930 - 2066726971.9
uncharacterized proteinAWU56_16Not AvailableNegative20764 - 2111410317.6
extracellular metal-dependent peptidaseAWU56_17Not AvailablePositive21326 - 24274105141.0
putative conserved secreted proteinAWU56_18Not AvailableNegative24308 - 2481118247.1
phosphoribosylformylglycinamidine synthaseAWU56_19Q5QWY0Negative24946 - 28905144485.0
uncharacterized proteinAWU56_20Not AvailablePositive28983 - 291265861.29

Displaying genes 11 – 20 of 2602 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

159 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da
BASm0000542HgHgChemical structure of HgNot available
Average200.59Da
Monoisotopic201.9706256Da

Displaying 1–10 of 159 metabolites

Health Effects

No health effects information available for this bacterium.