Donghicola sp. KarMa

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Donghicola

Description

Donghicola sp. KarMa is a bacterial species characterized by having a single replicon. The accession number for this organism is FMJB00000000.1, which serves as a unique identifier for its genomic data. The presence of a single replicon suggests a streamlined genetic structure, which can be advantageous for various metabolic processes and may influence the organism's adaptability to its environment. This trait is often associated with prokaryotic organisms, allowing for efficient regulation of gene expression and replication. The specific ecological role and habitat of Donghicola sp. KarMa are not detailed in the provided information. However, the genus Donghicola is generally understood to be associated with marine environments, indicating that Donghicola sp. KarMa may inhabit similar ecosystems. Such marine bacteria often play critical roles in nutrient cycling, contributing to the overall health of marine ecosystems. In summary, Donghicola sp. KarMa, with its single replicon as indicated by accession FMJB00000000.1, exemplifies a streamlined genetic organization that may enhance its adaptability in marine environments. Understanding the ecological role of this organism could provide insights into its contributions to marine microbiomes and the broader implications for oceanic nutrient cycles.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusDonghicola
SpeciesDonghicola eburneus
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Donghicola eburneus isolate KarMa genome assembly, contig:

Gene Summary

Adenine Count

858090 bp

Thymine Count

864101 bp

Guanine Count

1248189 bp

Cytosine Count

1242462 bp

Genome Length

4212842 bp

Protein-coding Genes

3880 genes

Non-Coding Genes

79 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
shikimate kinaseKARMA_2543Not AvailableNegative2640907 - 264145820640.0
putative membrane proteinKARMA_2544Not AvailablePositive2641585 - 26417345426.74
hypothetical proteinKARMA_2545Not AvailablePositive2641724 - 264323554589.6
tyrosine recombinase xerdKARMA_2546Not AvailablePositive2643244 - 264417334146.9
putative membrane proteinKARMA_2547Not AvailablePositive2644210 - 264550247391.4
3-hydroxyacyl-coa dehydrogenase type-2KARMA_2548Not AvailablePositive2645569 - 264632425638.7
holdfast attachment protein cKARMA_2549Not AvailableNegative2646321 - 264814466862.9
putative ornithine-acyl-acp acyltransferaseKARMA_2550Not AvailableNegative2648184 - 264893628097.2
putative smpa/omlaKARMA_2551Not AvailableNegative2649008 - 264946316350.4
putative 50s ribosomal protein l34KARMA_2552Not AvailablePositive2649537 - 265010020388.4

Displaying genes 2531 – 2540 of 3959 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.