Donghicola sp. KarMa

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Donghicola

Description

Donghicola sp. KarMa is a bacterial species characterized by having a single replicon. The accession number for this organism is FMJB00000000.1, which serves as a unique identifier for its genomic data. The presence of a single replicon suggests a streamlined genetic structure, which can be advantageous for various metabolic processes and may influence the organism's adaptability to its environment. This trait is often associated with prokaryotic organisms, allowing for efficient regulation of gene expression and replication. The specific ecological role and habitat of Donghicola sp. KarMa are not detailed in the provided information. However, the genus Donghicola is generally understood to be associated with marine environments, indicating that Donghicola sp. KarMa may inhabit similar ecosystems. Such marine bacteria often play critical roles in nutrient cycling, contributing to the overall health of marine ecosystems. In summary, Donghicola sp. KarMa, with its single replicon as indicated by accession FMJB00000000.1, exemplifies a streamlined genetic organization that may enhance its adaptability in marine environments. Understanding the ecological role of this organism could provide insights into its contributions to marine microbiomes and the broader implications for oceanic nutrient cycles.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusDonghicola
SpeciesDonghicola eburneus
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Donghicola eburneus isolate KarMa genome assembly, contig:

Gene Summary

Adenine Count

858090 bp

Thymine Count

864101 bp

Guanine Count

1248189 bp

Cytosine Count

1242462 bp

Genome Length

4212842 bp

Protein-coding Genes

3880 genes

Non-Coding Genes

79 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative entericidin ecna/b family proteinKARMA_2011Not AvailableNegative2086878 - 20869913803.77
putative peptide/nickel transport system substrate-binding proteinKARMA_2012Not AvailableNegative2087003 - 208882368402.2
d-beta-hydroxybutyrate dehydrogenaseKARMA_2013Not AvailablePositive2089170 - 208994327214.5
patatinKARMA_2014Not AvailablePositive2090028 - 209108638733.5
putative membrane proteinKARMA_2015Not AvailableNegative2091072 - 209181528090.1
pseudouridine-5'-phosphate glycosidaseKARMA_2016Not AvailableNegative2091909 - 209281431113.3
kinase, pfkb familyKARMA_2017Not AvailableNegative2092807 - 209370330700.7
putative nickel uptake substrate-specific transmembrane regionKARMA_2018Not AvailableNegative2093746 - 209433921408.1
putative secreted proteinKARMA_2019Not AvailablePositive2094542 - 209569341136.9
30s ribosomal protein s2KARMA_2020Not AvailablePositive2095883 - 209664127428.0

Displaying genes 2021 – 2030 of 3959 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.