Donghicola sp. KarMa

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Donghicola

Description

Donghicola sp. KarMa is a bacterial species characterized by having a single replicon. The accession number for this organism is FMJB00000000.1, which serves as a unique identifier for its genomic data. The presence of a single replicon suggests a streamlined genetic structure, which can be advantageous for various metabolic processes and may influence the organism's adaptability to its environment. This trait is often associated with prokaryotic organisms, allowing for efficient regulation of gene expression and replication. The specific ecological role and habitat of Donghicola sp. KarMa are not detailed in the provided information. However, the genus Donghicola is generally understood to be associated with marine environments, indicating that Donghicola sp. KarMa may inhabit similar ecosystems. Such marine bacteria often play critical roles in nutrient cycling, contributing to the overall health of marine ecosystems. In summary, Donghicola sp. KarMa, with its single replicon as indicated by accession FMJB00000000.1, exemplifies a streamlined genetic organization that may enhance its adaptability in marine environments. Understanding the ecological role of this organism could provide insights into its contributions to marine microbiomes and the broader implications for oceanic nutrient cycles.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusDonghicola
SpeciesDonghicola eburneus
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Donghicola eburneus isolate KarMa genome assembly, contig:

Gene Summary

Adenine Count

858090 bp

Thymine Count

864101 bp

Guanine Count

1248189 bp

Cytosine Count

1242462 bp

Genome Length

4212842 bp

Protein-coding Genes

3880 genes

Non-Coding Genes

79 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative abc transporter atp-binding protein yufoKARMA_1520Not AvailablePositive1559464 - 156099054365.8
abc transporter permeaseKARMA_1521Not AvailablePositive1560980 - 156202936722.5
putative nucleoside abc transporter membrane proteinKARMA_1522Not AvailablePositive1562029 - 156297332987.4
cytosine deaminase codaKARMA_1523Not AvailablePositive1562970 - 156425346459.1
putative asp/glu/hydantoin racemaseKARMA_1524Not AvailableNegative1564254 - 156500926371.7
peptidase m24KARMA_1525Not AvailableNegative1565011 - 156617141773.9
diaminopropionate ammonia-lyase dpalKARMA_1526Not AvailableNegative1566164 - 156720434998.9
asnc-type transcription regulatorKARMA_1527Not AvailablePositive1567383 - 156784417010.5
beta-lactamase ampcKARMA_1528Not AvailablePositive1567932 - 156888833460.0
ectoine hydrolase doeaKARMA_1529Not AvailableNegative1568933 - 157012945441.0

Displaying genes 1531 – 1540 of 3959 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.