Caballeronia pedi

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Caballeronia

Description

Caballeronia pedi is a Gram-negative bacterium characterized by its rod-shaped morphology and aerobic oxygen requirement. This organism possesses a single replicon, which is indicative of its genomic structure. The available genomic data for Caballeronia pedi can be found under the accession number FCOE00000000.2. As a member of the Caballeronia genus, Caballeronia pedi contributes to the complex interactions within its ecological niche. Gram-negative bacteria, including those in the Caballeronia genus, are known for their unique cell wall structure, which consists of a thin peptidoglycan layer surrounded by an outer membrane. This characteristic can influence their susceptibility to antibiotics and their interactions with other microorganisms and environmental factors. The aerobic nature of Caballeronia pedi suggests that it relies on oxygen for its metabolic processes, which may affect its distribution in various environments, particularly those rich in oxygen. Understanding the traits of Caballeronia pedi can provide insights into its potential roles in microbial communities, nutrient cycling, and interactions with plants or other organisms. Further research on this bacterium could reveal its ecological significance and potential applications in biotechnology or agriculture.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusCaballeronia
SpeciesCaballeronia pedi
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Burkholderia pedi type strain LMG 29323 genome assembly, contig:

Gene Summary

Adenine Count

1694962 bp

Thymine Count

1691119 bp

Guanine Count

2864450 bp

Cytosine Count

2890776 bp

Genome Length

9141307 bp

Protein-coding Genes

8328 genes

Non-Coding Genes

171 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glycogen debranching enzyme glgxAWB80_04685B9G434Negative5026739 - 502883278035.1
glycogen phosphorylase family proteinAWB80_04686Not AvailableNegative5028819 - 503131793819.7
allantoate amidohydrolaseAWB80_04687Q53389Negative5031436 - 503266843571.0
arac family transcriptional regulatorAWB80_04688G3XCU2Negative5032702 - 503369736783.4
short-chain dehydrogenase/reductase sdrAWB80_04689Q28IU1Positive5033758 - 503455227893.4
major facilitator transporterAWB80_04690Q58713Negative5034557 - 503572340896.1
galactarate dehydrataseAWB80_04691Not AvailableNegative5035821 - 503741356114.1
5-dehydro-4-deoxyglucarate dehydrataseAWB80_04692P42233Positive5037564 - 503853234995.1
d-galactonate transporterAWB80_04693Not AvailablePositive5038663 - 504001548584.0
hypothetical proteinAWB80_04694Not AvailableNegative5040062 - 504039411657.7

Displaying genes 4731 – 4740 of 8499 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

505 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002634-(hydroxymethyl)benzenesulfonateC7H7O4SChemical structure of 4-(hydroxymethyl)benzenesulfonateNot available
Average187.19Da
Monoisotopic187.007053459Da

Displaying 1–10 of 505 metabolites

Health Effects

No health effects information available for this bacterium.