Alteromonas mediterranea DE

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Alteromonadaceae

Genus

Alteromonas

Description

Alteromonas mediterranea DE is a Gram-negative, rod-shaped bacterium that thrives in aquatic environments. This organism is classified as a mesophilic heterotroph, indicating it primarily derives its energy from organic compounds in temperatures that are typically moderate. A notable feature of A. mediterranea DE is its aerobic nature, requiring oxygen for metabolic processes. The bacterium possesses mobility, facilitated by the presence of flagella, which enhances its ability to navigate its aquatic habitat. A. mediterranea DE is characterized by a unique cellular structure that includes two membranes and a single replicon, which is indicative of its genetic organization. As a free-living organism, A. mediterranea DE plays an important role in its ecosystem, contributing to the microbial diversity and functioning of aquatic systems. Its heterotrophic lifestyle suggests a capacity for decomposing organic materials, potentially influencing nutrient cycling within its environment. Such traits highlight the ecological significance of A. mediterranea DE, as it may participate in the breakdown of organic matter, thereby supporting the health of aquatic ecosystems. The accession number for this bacterium is NC_011138.3, which provides a reference for further genomic studies and analysis.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyAlteromonadaceae
GenusAlteromonas
SpeciesAlteromonas mediterranea
StrainDE

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Alteromonas mediterranea DE
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Alteromonas mediterranea DE, complete sequence.

Gene Summary

Adenine Count

1237137 bp

Thymine Count

1232999 bp

Guanine Count

1007649 bp

Cytosine Count

1002890 bp

Genome Length

4480937 bp

Protein-coding Genes

3903 genes

Non-Coding Genes

82 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
atp-dependent chaperone clpbMADE_RS12620Q87S63Negative2850831 - 285340795444.6
peptidoglycan editing factor pgefMADE_RS12625A0A384KG77Negative2853657 - 285441226740.7
23s rrna pseudouridine(1911/1915/1917) synthase rludMADE_RS12630P65837Negative2854429 - 285541236549.2
outer membrane protein assembly factor bamdMADE_RS12635P33641Positive2855599 - 285636329183.7
chrr family anti-sigma-e factorMADE_RS12640Not AvailableNegative2856486 - 285722627318.4
sigma-70 family rna polymerase sigma factorMADE_RS12645Q3IYV6Negative2857219 - 285783023096.8
lon peptidase substrate-binding domain-containing proteinMADE_RS12650Not AvailableNegative2857951 - 285852621736.3
nuclear transport factor 2 family proteinMADE_RS12655Not AvailablePositive2858786 - 285922616586.0
sdr family nad(p)-dependent oxidoreductaseMADE_RS12660Q8CN40Positive2859223 - 285994226632.3
nad(p)/fad-dependent oxidoreductaseMADE_RS12665Not AvailablePositive2859954 - 286121947896.1

Displaying genes 2521 – 2530 of 3985 in total

Metabolites

1915 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 1915 metabolites

Health Effects

No health effects information available for this bacterium.