Alteromonas mediterranea DE

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Alteromonadaceae

Genus

Alteromonas

Description

Alteromonas mediterranea DE is a Gram-negative, rod-shaped bacterium that thrives in aquatic environments. As a heterotrophic organism, it obtains its energy through the consumption of organic compounds, which is characteristic of many marine bacteria. This organism is strictly aerobic, indicating that it requires oxygen for its metabolic processes. The ecological role of Alteromonas mediterranea DE may be significant in nutrient cycling within its aquatic habitat, as its heterotrophic nature enables it to contribute to the degradation of organic matter, thereby influencing the availability of nutrients for other microorganisms and higher trophic levels. Its presence in marine ecosystems may also reflect its adaptation to specific environmental conditions, such as varying levels of organic material and oxygen availability, which could impact community dynamics in these habitats. Understanding the metabolic capabilities and ecological contributions of Alteromonas mediterranea DE could provide valuable insights into microbial processes in marine ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyAlteromonadaceae
GenusAlteromonas
SpeciesAlteromonas mediterranea
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Alteromonas mediterranea DE
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Alteromonas mediterranea DE

Accession NumberNC_011138.3

Gene Summary

Adenine Count

1237137 bp

Thymine Count

1232999 bp

Guanine Count

1007649 bp

Cytosine Count

1002890 bp

Genome Length

4480937 bp

Protein-coding Genes

3903 genes

Non-Coding Genes

82 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
dna polymerase iii subunit betaMADE_RS00010P22838+1659 - 275940911.7
dna replication/repair protein recfMADE_RS00015Q15ZZ5+2871 - 395940994.7
dna topoisomerase (atp-hydrolyzing) subunit bMADE_RS00020O51859+3968 - 638890423.5
hypothetical proteinMADE_RS00025Not Available-6598 - 704116170.3
glycine--trna ligase subunit betaMADE_RS00030B4S277-7124 - 920275718.2
glycine--trna ligase subunit alphaMADE_RS00035B4S278-9205 - 1011034514.0
dna-3-methyladenine glycosylase iMADE_RS00040P05100+10256 - 1086423249.7
duf2489 domain-containing proteinMADE_RS00045Not Available-10951 - 1141817320.1
der gtpase-activating protein yihiMADE_RS00050A0KEY2-11437 - 1194019021.5
class i sam-dependent methyltransferaseMADE_RS00055Not Available-12068 - 1260120134.0

Displaying genes 1 – 10 of 3985 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

232 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000403(S)-acetoinC4H8O2Chemical structure of (S)-acetoinNot available
Average88.1051Da
Monoisotopic88.0524295Da

Displaying 1–10 of 232 metabolites