Idiomarina sp. H105

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Idiomarinaceae

Genus

Idiomarina

Description

Idiomarina sp. H105 is a notable microorganism characterized by the presence of flagella, which suggests it is motile. This feature can be significant for its ecological interactions, as motility may facilitate nutrient acquisition and adaptation to varying environments. The genome of Idiomarina sp. H105 consists of a single replicon, indicating a streamlined genetic structure. Such a configuration can be advantageous for rapid replication and efficient metabolic processes, which are crucial for survival in diverse habitats. The genomic data for Idiomarina sp. H105 is cataloged under the accession number LOPZ00000000.1, providing a reference point for researchers interested in studying its genetic makeup and functional capabilities. Understanding the traits of Idiomarina sp. H105 can offer insights into its ecological roles, particularly in marine environments where motility might play a critical role in accessing nutrients or interacting with other microbial communities. The presence of flagella may enhance its competitive edge, allowing it to thrive in specific niches within the ecosystem.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyIdiomarinaceae
GenusIdiomarina
SpeciesIdiomarina sp. H105
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Idiomarina sp. H105 contig_99, whole genome shotgun sequence.

Gene Summary

Adenine Count

1444017 bp

Thymine Count

1458383 bp

Guanine Count

1641801 bp

Cytosine Count

1607831 bp

Genome Length

6152032 bp

Protein-coding Genes

5603 genes

Non-Coding Genes

187 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
histidine kinaseAUR68_12745A0A0H3NIL4Positive1057574 - 105889949722.2
pyridine nucleotide transhydrogenaseAUR68_12750A8AKW0Negative1058880 - 106029851715.3
adp-ribose diphosphataseAUR68_12755P45799Positive1060425 - 106098520762.9
3'(2'),5'-bisphosphate nucleotidase cysqAUR68_12760P70714Positive1060978 - 106179030729.4
hypothetical proteinAUR68_12765Q5QW88Negative1061762 - 10619988725.1
abc transporter atp-binding proteinAUR68_12770A0A0H2VBH0Negative1062011 - 106392471443.7
dna-binding proteinAUR68_12775P0ADX0Positive1063982 - 10641857649.25
epoxyqueuosine reductaseAUR68_12780P39288Negative1064182 - 106530942550.0
bifunctional adp-dependent (s)-nad(p)h-hydrate dehydratase/nad(p)h-hydrate epimeraseAUR68_12785Not AvailablePositive1065324 - 106685653479.9
trna threonylcarbamoyladenosine biosynthesis protein tsaeAUR68_12790P0AF68Positive1066858 - 106731617118.3

Displaying genes 1101 – 1110 of 5790 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

243 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 243 metabolites

Health Effects

No health effects information available for this bacterium.