cyanobacterium endosymbiont of Rhopalodia gibberula

Kingdom

Bacillati

Phylum

Cyanobacteriota

Class

Order

Family

Genus

Description

Cyanobacterium endosymbiont of Rhopalodia gibberula is characterized by having a single replicon, which is indicative of its genomic structure. The organism is cataloged under the accession number NZ_AP018341.1, providing a reference point for researchers interested in its genetic material. This cyanobacterial endosymbiont plays a significant role in the ecology of Rhopalodia gibberula, a diatom that is known to inhabit freshwater environments. The endosymbiotic relationship suggests that the cyanobacterium may contribute to the photosynthetic capabilities of its host, enabling it to harness sunlight and produce organic compounds essential for growth and survival. Such interactions are vital in aquatic ecosystems, where diatoms serve as primary producers and are integral to the food web. The presence of a cyanobacterial endosymbiont within Rhopalodia gibberula exemplifies the importance of symbiotic relationships in promoting biodiversity and sustaining ecological balance. The specific traits of this endosymbiont, including its single replicon, highlight the evolutionary adaptations that facilitate the coexistence of these organisms in their respective environments. Understanding these dynamics can further our knowledge of microbial interactions and their implications for ecosystem health.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Cyanobacterium endosymbiont of Rhopalodia gibberula isolate

Gene Summary

Adenine Count

998535 bp

Thymine Count

996853 bp

Guanine Count

512062 bp

Cytosine Count

512859 bp

Genome Length

3020309 bp

Protein-coding Genes

1978 genes

Non-Coding Genes

45 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
fructose-bisphosphatase class iiRGRSB_RS10855Not AvailableNegative658957 - 66004539678.9
s-layer homology domain-containing proteinRGRSB_RS02040Not AvailableNegative660373 - 66154243731.5
rna recognition motif domain-containing proteinRGRSB_RS02045Not AvailablePositive665794 - 66625816925.2
ribose-5-phosphate isomerase rpiaRGRSB_RS02050Not AvailablePositive666381 - 66709125210.9
duf3370 family proteinRGRSB_RS10400Not AvailableNegative668152 - 66850212712.2
hypothetical proteinRGRSB_RS10685Not AvailableNegative668499 - 6685702543.02
trna (n6-isopentenyl adenosine(37)-c2)-methylthiotransferase miabRGRSB_RS02060Not AvailableNegative670450 - 67179050695.7
cop23 domain-containing proteinRGRSB_RS02065Not AvailableNegative672354 - 67304924682.0
duf2301 domain-containing membrane proteinRGRSB_RS02070Not AvailablePositive673480 - 67414224471.7
dna-formamidopyrimidine glycosylaseRGRSB_RS02075Not AvailableNegative674804 - 67565232024.3

Displaying genes 411 – 420 of 2023 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.