Vibrio sp. MEBiC08052

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio sp. MEBiC08052 is characterized by having a single replicon. This trait indicates a relatively streamlined genetic structure, which may be advantageous for adaptability and survival in various environments. The accession number for this strain is LQIY00000000.1, which serves as a reference for genomic information and facilitates further study. As a member of the Vibrio genus, it is likely that Vibrio sp. MEBiC08052 inhabits aquatic environments, potentially thriving in marine or estuarine ecosystems. Members of the Vibrio genus are known for their diverse metabolic capabilities and ecological roles, including interactions with other microorganisms and involvement in nutrient cycling. The presence of a single replicon may have implications for the organism's evolutionary strategies, such as its response to environmental pressures and its ability to acquire new traits through horizontal gene transfer. Understanding the genetic makeup and ecological roles of Vibrio sp. MEBiC08052 can contribute to broader insights into the dynamics of microbial communities in aquatic systems. This knowledge may also inform studies on the impact of Vibrio species on marine health and their interactions with other organisms, including potential pathogenicity in certain contexts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio sp. MEBiC08052
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio sp. MEBiC08052
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio sp. MEBiC08052


Gene Summary

Adenine Count

1272341 bp

Thymine Count

1276435 bp

Guanine Count

1069294 bp

Cytosine Count

1075745 bp

Genome Length

4693815 bp

Protein-coding Genes

4284 genes

Non-Coding Genes

116 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Tail proteinVRK_17490Not AvailableNegative1873679 - 187469537554.8
Phage tail xVRK_17500Not AvailableNegative1874686 - 18748957656.36
Putative tail proteinVRK_17510Not AvailableNegative1874892 - 187527214315.1
Phage-related tail proteinVRK_17520Not AvailableNegative1875269 - 187771685899.4
hypothetical proteinVRK_17530Not AvailableNegative1877720 - 18778334418.49
Putative phage-related proteinVRK_17540Not AvailableNegative1877839 - 187839921534.5
Putative tail tube proteinVRK_17550Not AvailableNegative1878523 - 187902918602.3
Major tail sheath proteinVRK_17560Not AvailableNegative1879029 - 188019841700.6
hypothetical proteinVRK_17570Not AvailableNegative1880191 - 18803947612.3
hypothetical proteinVRK_17580Not AvailableNegative1880478 - 188102019821.7

Displaying genes 1 – 10 of 4400 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

265 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da

Displaying 1–10 of 265 metabolites

Health Effects

No health effects information available for this bacterium.