Paraburkholderia caffeinilytica

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Paraburkholderia

Description

Paraburkholderia caffeinilytica is a rod-shaped bacterium notable for its possession of flagella, which likely contributes to its motility. This organism is characterized by having two replicons, indicating a complex genomic structure that may facilitate various metabolic processes. The genomic data for Paraburkholderia caffeinilytica can be accessed through the following accession numbers: NZ_CP031468.1 and NZ_CP031467.1. This bacterium is of particular interest due to its potential ecological roles, especially in environments where caffeine is present. Paraburkholderia caffeinilytica is known for its ability to degrade caffeine, making it a candidate for bioremediation efforts in contaminated sites. Its metabolic capabilities could play a significant role in the cycling of nitrogen and carbon in ecosystems where caffeine from various sources, such as coffee waste, is prevalent. The presence of flagella suggests that Paraburkholderia caffeinilytica is capable of active movement toward substrates, which may enhance its efficiency in colonizing environments rich in organic material. Its dual-replicon system may provide advantages in adaptability and survival under varying environmental conditions. Overall, the characteristics of Paraburkholderia caffeinilytica highlight its potential ecological significance in biogeochemical processes and waste management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusParaburkholderia
SpeciesParaburkholderia caffeinilytica
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paraburkholderia caffeinilytica strain CF1 plasmid p1, complete

Gene Summary

Adenine Count

36937 bp

Thymine Count

36047 bp

Guanine Count

50251 bp

Cytosine Count

51356 bp

Genome Length

174591 bp

Protein-coding Genes

152 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
atp-dependent clp protease atp-binding subunit clpxDSC91_RS34315Not AvailablePositive4035897 - 403716846385.3
endopeptidase laDSC91_RS34320Not AvailablePositive4037371 - 403979789393.9
hu family dna-binding proteinDSC91_RS34325Not AvailablePositive4040141 - 40404139268.45
Trna-valNot AvailableNot AvailablePositive4040559 - 4040634Not Available
tyrosine-type recombinase/integraseDSC91_RS34335Not AvailablePositive4040841 - 404222351201.3
hypothetical proteinDSC91_RS37735Not AvailablePositive4042991 - 40432489740.74
helix-turn-helix transcriptional regulatorDSC91_RS34340Not AvailablePositive4043287 - 404402727442.8
trna 2-selenouridine(34) synthase mnmhDSC91_RS34350Not AvailableNegative4044968 - 404602640242.6
tropomyosinDSC91_RS34355Not AvailablePositive4046447 - 404700720943.5
helix-turn-helix transcriptional regulatorDSC91_RS34360Not AvailablePositive4047111 - 40473629352.1

Displaying genes 3801 – 3810 of 4231 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.