Paraburkholderia caffeinilytica

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Paraburkholderia

Description

Paraburkholderia caffeinilytica is a rod-shaped bacterium notable for its possession of flagella, which likely contributes to its motility. This organism is characterized by having two replicons, indicating a complex genomic structure that may facilitate various metabolic processes. The genomic data for Paraburkholderia caffeinilytica can be accessed through the following accession numbers: NZ_CP031468.1 and NZ_CP031467.1. This bacterium is of particular interest due to its potential ecological roles, especially in environments where caffeine is present. Paraburkholderia caffeinilytica is known for its ability to degrade caffeine, making it a candidate for bioremediation efforts in contaminated sites. Its metabolic capabilities could play a significant role in the cycling of nitrogen and carbon in ecosystems where caffeine from various sources, such as coffee waste, is prevalent. The presence of flagella suggests that Paraburkholderia caffeinilytica is capable of active movement toward substrates, which may enhance its efficiency in colonizing environments rich in organic material. Its dual-replicon system may provide advantages in adaptability and survival under varying environmental conditions. Overall, the characteristics of Paraburkholderia caffeinilytica highlight its potential ecological significance in biogeochemical processes and waste management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusParaburkholderia
SpeciesParaburkholderia caffeinilytica
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paraburkholderia caffeinilytica strain CF1 plasmid p1, complete

Gene Summary

Adenine Count

36937 bp

Thymine Count

36047 bp

Guanine Count

50251 bp

Cytosine Count

51356 bp

Genome Length

174591 bp

Protein-coding Genes

152 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type iii secretion system inner membrane ring lipoprotein sctjDSC91_RS31260Not AvailablePositive3332876 - 333372130185.3
hypothetical proteinDSC91_RS31265Not AvailablePositive3333718 - 333429321288.7
flih/sctl family proteinDSC91_RS31270Not AvailablePositive3334287 - 333508127847.4
flim/flin family flagellar motor switch proteinDSC91_RS31275Not AvailablePositive3335078 - 333604935216.5
type iii secretion system export apparatus subunit sctrDSC91_RS31280Not AvailablePositive3336046 - 333669022986.8
type iii secretion system export apparatus subunit sctsDSC91_RS31285Not AvailablePositive3336687 - 33369629726.14
esct/ysct/hrct family type iii secretion system export apparatus proteinDSC91_RS31290Not AvailablePositive3336965 - 333768725859.1
escu/yscu/hrcu family type iii secretion system export apparatus switch proteinDSC91_RS31295Not AvailablePositive3337684 - 333842427858.2
flagellar biosynthesis protein flhaDSC91_RS31300Not AvailablePositive3338426 - 334050473661.4
flii/yscn family atpaseDSC91_RS31305Not AvailablePositive3340516 - 334184146908.4

Displaying genes 3191 – 3200 of 4231 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.