Paraburkholderia caffeinilytica

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Paraburkholderia

Description

Paraburkholderia caffeinilytica is a rod-shaped bacterium notable for its possession of flagella, which likely contributes to its motility. This organism is characterized by having two replicons, indicating a complex genomic structure that may facilitate various metabolic processes. The genomic data for Paraburkholderia caffeinilytica can be accessed through the following accession numbers: NZ_CP031468.1 and NZ_CP031467.1. This bacterium is of particular interest due to its potential ecological roles, especially in environments where caffeine is present. Paraburkholderia caffeinilytica is known for its ability to degrade caffeine, making it a candidate for bioremediation efforts in contaminated sites. Its metabolic capabilities could play a significant role in the cycling of nitrogen and carbon in ecosystems where caffeine from various sources, such as coffee waste, is prevalent. The presence of flagella suggests that Paraburkholderia caffeinilytica is capable of active movement toward substrates, which may enhance its efficiency in colonizing environments rich in organic material. Its dual-replicon system may provide advantages in adaptability and survival under varying environmental conditions. Overall, the characteristics of Paraburkholderia caffeinilytica highlight its potential ecological significance in biogeochemical processes and waste management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusParaburkholderia
SpeciesParaburkholderia caffeinilytica
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paraburkholderia caffeinilytica strain CF1 plasmid p1, complete

Gene Summary

Adenine Count

36937 bp

Thymine Count

36047 bp

Guanine Count

50251 bp

Cytosine Count

51356 bp

Genome Length

174591 bp

Protein-coding Genes

152 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
site-specific tyrosine recombinase xerdDSC91_RS22195Not AvailableNegative1373559 - 137449434897.7
methylated-dna--[protein]-cysteine s-methyltransferaseDSC91_RS22200Not AvailableNegative1374491 - 137496116976.5
trna epoxyqueuosine(34) reductase quegDSC91_RS22205Not AvailableNegative1375073 - 137631444950.4
trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex atpase subunit type 1 tsaeDSC91_RS22210Not AvailablePositive1376332 - 137695222562.6
n-acetylmuramoyl-l-alanine amidaseDSC91_RS22215Not AvailablePositive1376934 - 137852056828.7
eama family transporterDSC91_RS22220Not AvailableNegative1378629 - 137951031234.4
pirin family proteinDSC91_RS22225Not AvailablePositive1379688 - 138056331433.6
thioredoxinDSC91_RS22230Not AvailablePositive1380724 - 138157231314.3
trna cyclic n6-threonylcarbamoyladenosine(37) synthase tcdaDSC91_RS22235Not AvailableNegative1381663 - 138252029920.5
pyridoxamine 5'-phosphate oxidaseDSC91_RS22240Not AvailablePositive1382766 - 138340724525.7

Displaying genes 1391 – 1400 of 4231 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.