Sphingopyxis sp. HIX

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Sphingopyxis sp. HIX is a rod-shaped bacterium characterized by a single replicon. This attribute indicates a streamlined genetic structure that may contribute to its adaptability in various environments. The organism is cataloged under the accession number LNSB00000000.1, which provides a reference for genetic sequencing and further research. As a member of the Sphingopyxis genus, this bacterium is likely involved in the degradation of complex organic compounds, a trait common among its relatives. This ecological role suggests that Sphingopyxis sp. HIX may play a significant part in biogeochemical cycles, particularly in environments where organic pollutants are present. The rod shape of Sphingopyxis sp. HIX may confer advantages in motility and nutrient uptake, allowing it to thrive in diverse habitats. Understanding the specific ecological niches occupied by this bacterium could provide insights into its interactions with other microorganisms and its potential applications in bioremediation or other biotechnological processes. In summary, Sphingopyxis sp. HIX, with its distinctive rod shape and single replicon, represents a fascinating subject for further microbiological exploration, particularly concerning its ecological role in organic matter degradation and its potential utility in environmental biotechnology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis sp. HIX
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingopyxis sp. HIX HIX_contig000090, whole genome shotgun

Gene Summary

Adenine Count

810878 bp

Thymine Count

807339 bp

Guanine Count

1614557 bp

Cytosine Count

1633703 bp

Genome Length

4866477 bp

Protein-coding Genes

4397 genes

Non-Coding Genes

72 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinATE62_01955Q53229Negative426996 - 42746017484.1
uroporphyrinogen decarboxylaseATE62_01960Q1GP74Negative427463 - 42850937429.0
phosphoenolpyruvate synthetase regulatory proteinATE62_01965Q1GP75Positive428825 - 42963729909.9
septum formation protein mafATE62_01970Q1GP76Positive429634 - 43023021096.3
shikimate dehydrogenaseATE62_01975Q1GP77Positive430227 - 43103928313.2
dephospho-coa kinaseATE62_01980Q2GC60Positive431036 - 43165922738.2
dna polymerase iii subunit epsilonATE62_01985Q08880Positive431679 - 43237725319.3
30s ribosomal protein s30ATE62_01990P17265Positive432424 - 43299920847.4
pts lactose transporter subunit iicATE62_01995P30335Positive433158 - 43362216365.8
hypothetical proteinATE62_02000Not AvailablePositive433638 - 43397612169.5

Displaying genes 411 – 420 of 4469 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

358 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000338(1R,4R,5R)-5-hydroxycamphorC10H16O2Chemical structure of (1R,4R,5R)-5-hydroxycamphorNot available
Average168.2328Da
Monoisotopic168.115029756Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da

Displaying 1–10 of 358 metabolites

Health Effects

No health effects information available for this bacterium.