Paraphotobacterium marinum str. NSCS20N07D

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Paraphotobacterium

Description

Paraphotobacterium marinum strain NSCS20N07D is characterized by possessing three replicons, which are distinct genetic elements that may contribute to its adaptability and functional diversity. The strain is cataloged with the following accession numbers: NZ_CP022356.1, NZ_CP022355.1, and NZ_CP022357.1. These accession numbers are significant as they provide a pathway for researchers to access genomic information and further explore the genetic basis of its traits and functions. The presence of multiple replicons in Paraphotobacterium marinum may indicate a complex genetic architecture, which can facilitate various metabolic processes and enhance survival in diverse marine environments. This structural feature may allow the organism to efficiently manage and express a range of genes that are crucial for its ecological interactions, such as nutrient cycling or symbiotic relationships with other marine microorganisms. In a broader biological and ecological context, the characteristics of Paraphotobacterium marinum str. NSCS20N07D suggest its potential role in marine ecosystems. The ability to thrive in fluctuating conditions and engage in complex interactions with other species may contribute to the stability and functionality of marine microbial communities. Understanding the genetic makeup of this strain can provide insights into its ecological significance and its contributions to marine biogeochemical cycles.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusParaphotobacterium
SpeciesParaphotobacterium marinum
StrainNSCS20N07D

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paraphotobacterium marinum strain NSCS20N07D plasmid p1, complete

Gene Summary

Adenine Count

1894 bp

Thymine Count

1694 bp

Guanine Count

995 bp

Cytosine Count

956 bp

Genome Length

5539 bp

Protein-coding Genes

3 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lysr family transcriptional regulatorCF386_RS08410Not AvailablePositive263731 - 26462134189.0
translesion error-prone dna polymerase v subunit umucCF386_RS08415Not AvailableNegative264628 - 26588747870.5
translesion error-prone dna polymerase v autoproteolytic subunitCF386_RS08420Not AvailableNegative265887 - 26632416287.7
hypothetical proteinCF386_RS08425Not AvailablePositive266554 - 26720725640.7
lytr/algr family response regulator transcription factorCF386_RS08430Not AvailablePositive267204 - 26755713981.0
formate-dependent phosphoribosylglycinamide formyltransferaseCF386_RS08435Not AvailablePositive267719 - 26890343843.6
nad(p)/fad-dependent oxidoreductaseCF386_RS08440Not AvailablePositive269124 - 27010437493.5
cryptochrome/photolyase family proteinCF386_RS08445Not AvailablePositive270104 - 27153456655.1
cryptochrome/photolyase family proteinCF386_RS08450Not AvailablePositive271536 - 27306259427.6
duf2256 domain-containing proteinCF386_RS08455Not AvailablePositive273082 - 2732195539.83

Displaying genes 211 – 220 of 2547 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.