Paraphotobacterium marinum str. NSCS20N07D

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Paraphotobacterium

Description

Paraphotobacterium marinum strain NSCS20N07D is characterized by possessing three replicons, which are distinct genetic elements that may contribute to its adaptability and functional diversity. The strain is cataloged with the following accession numbers: NZ_CP022356.1, NZ_CP022355.1, and NZ_CP022357.1. These accession numbers are significant as they provide a pathway for researchers to access genomic information and further explore the genetic basis of its traits and functions. The presence of multiple replicons in Paraphotobacterium marinum may indicate a complex genetic architecture, which can facilitate various metabolic processes and enhance survival in diverse marine environments. This structural feature may allow the organism to efficiently manage and express a range of genes that are crucial for its ecological interactions, such as nutrient cycling or symbiotic relationships with other marine microorganisms. In a broader biological and ecological context, the characteristics of Paraphotobacterium marinum str. NSCS20N07D suggest its potential role in marine ecosystems. The ability to thrive in fluctuating conditions and engage in complex interactions with other species may contribute to the stability and functionality of marine microbial communities. Understanding the genetic makeup of this strain can provide insights into its ecological significance and its contributions to marine biogeochemical cycles.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusParaphotobacterium
SpeciesParaphotobacterium marinum
StrainNSCS20N07D

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paraphotobacterium marinum strain NSCS20N07D plasmid p1, complete

Gene Summary

Adenine Count

1894 bp

Thymine Count

1694 bp

Guanine Count

995 bp

Cytosine Count

956 bp

Genome Length

5539 bp

Protein-coding Genes

3 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligaseCF386_RS02130Not AvailableNegative395511 - 39701956507.1
peptidoglycan d,d-transpeptidase ftsi family proteinCF386_RS02135Not AvailableNegative397035 - 39875363483.7
cell division protein ftslCF386_RS02140Not AvailableNegative398737 - 39908113417.4
16s rrna (cytosine(1402)-n(4))-methyltransferase rsmhCF386_RS02145Not AvailableNegative399078 - 40002835628.8
Ncrna_class:rnase_p_rnaNot AvailableNot AvailablePositive400094 - 400441Not Available
16s rrna (cytidine(1402)-2'-o)-methyltransferaseCF386_RS02155Not AvailableNegative400475 - 40134432827.8
penicillin-binding protein activatorCF386_RS02160Not AvailablePositive401410 - 40301459840.4
sis domain-containing proteinCF386_RS02165Not AvailablePositive403028 - 40361820990.3
bon domain-containing proteinCF386_RS02170Not AvailablePositive403626 - 40413519123.9
clpxp protease specificity-enhancing factorCF386_RS02175Not AvailableNegative404163 - 40457615968.8

Displaying genes 1491 – 1500 of 2547 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.