Paraphotobacterium marinum str. NSCS20N07D

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Paraphotobacterium

Description

Paraphotobacterium marinum strain NSCS20N07D is characterized by possessing three replicons, which are distinct genetic elements that may contribute to its adaptability and functional diversity. The strain is cataloged with the following accession numbers: NZ_CP022356.1, NZ_CP022355.1, and NZ_CP022357.1. These accession numbers are significant as they provide a pathway for researchers to access genomic information and further explore the genetic basis of its traits and functions. The presence of multiple replicons in Paraphotobacterium marinum may indicate a complex genetic architecture, which can facilitate various metabolic processes and enhance survival in diverse marine environments. This structural feature may allow the organism to efficiently manage and express a range of genes that are crucial for its ecological interactions, such as nutrient cycling or symbiotic relationships with other marine microorganisms. In a broader biological and ecological context, the characteristics of Paraphotobacterium marinum str. NSCS20N07D suggest its potential role in marine ecosystems. The ability to thrive in fluctuating conditions and engage in complex interactions with other species may contribute to the stability and functionality of marine microbial communities. Understanding the genetic makeup of this strain can provide insights into its ecological significance and its contributions to marine biogeochemical cycles.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusParaphotobacterium
SpeciesParaphotobacterium marinum
StrainNSCS20N07D

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paraphotobacterium marinum strain NSCS20N07D plasmid p1, complete

Gene Summary

Adenine Count

1894 bp

Thymine Count

1694 bp

Guanine Count

995 bp

Cytosine Count

956 bp

Genome Length

5539 bp

Protein-coding Genes

3 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf493 family protein ybedCF386_RS01185Not AvailablePositive219494 - 21976310119.4
lipoyl(octanoyl) transferase lipbCF386_RS01190Not AvailablePositive219777 - 22041523975.2
lipoyl synthaseCF386_RS01195Not AvailablePositive220436 - 22141036698.3
outer membrane protein assembly factor bamcCF386_RS01200Not AvailableNegative221463 - 22245238007.9
4-hydroxy-tetrahydrodipicolinate synthaseCF386_RS01205Not AvailableNegative222463 - 22334732278.9
glycine cleavage system protein rCF386_RS01210Not AvailablePositive223500 - 22403320053.5
thioredoxin-dependent thiol peroxidaseCF386_RS01215Not AvailablePositive224132 - 22459017596.1
ai-2e family transporterCF386_RS01220Not AvailableNegative224664 - 22571339547.6
nad(p)h:quinone oxidoreductaseCF386_RS01225Not AvailablePositive225842 - 22642020942.2
uracil phosphoribosyltransferaseCF386_RS01230Not AvailableNegative226386 - 22704224295.9

Displaying genes 1301 – 1310 of 2547 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.