Pseudomonas sp. DY-1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. DY-1 is characterized by having two replicons, which indicates a complex genetic structure that may contribute to its adaptability and metabolic versatility. This strain is cataloged under two specific accession numbers: NZ_CP032616.1 and NZ_CP032615.1, which provide a reference for its genomic sequences in biological databases. The presence of two replicons in Pseudomonas sp. DY-1 suggests that it may possess a unique ability to regulate different sets of genes independently, potentially enabling it to thrive in diverse environmental conditions. This genetic architecture might enhance its survival capabilities in various niches, allowing for efficient utilization of available resources. The ecological insights derived from the traits of Pseudomonas sp. DY-1 highlight its potential role in bioremediation and nutrient cycling. Given the known versatility of Pseudomonas species in degrading pollutants and contributing to soil health, Pseudomonas sp. DY-1 may play a significant role in environmental microbiology, especially in environments affected by contaminants. Its genomic characteristics could provide a foundation for further studies aimed at harnessing its abilities for biotechnological applications. Thus, Pseudomonas sp. DY-1 exemplifies the importance of genetic diversity in microbial adaptation and ecological functionality.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. DY-1
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. DY-1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. DY-1 chromosome, complete genome.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

5402 genes

Non-Coding Genes

160 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
mmob/dmpm family proteinD6Z43_RS16445Not AvailableNegative3479663 - 347993210391.2
aromatic/alkene monooxygenase hydroxylase subunit betaD6Z43_RS16450Not AvailableNegative3479929 - 348092437269.4
phenol hydroxylase subunitD6Z43_RS16455Not AvailableNegative3480979 - 348123610012.7
sigma-54-dependent fis family transcriptional regulatorD6Z43_RS16460Not AvailablePositive3481620 - 348334464440.2
catechol 1,2-dioxygenaseD6Z43_RS16465Not AvailablePositive3483487 - 348439833505.1
3-isopropylmalate dehydrataseD6Z43_RS16470Not AvailablePositive3484631 - 348506515393.4
sulfite exporter taue/safe family proteinD6Z43_RS16475Not AvailablePositive3485363 - 348612126137.2
exodeoxyribonuclease vii small subunitD6Z43_RS16480Not AvailablePositive3486353 - 34865958980.4
(2e,6e)-farnesyl diphosphate synthaseD6Z43_RS16485Not AvailablePositive3486592 - 348747931341.4
phosphatase pap2 family proteinD6Z43_RS16490Not AvailableNegative3487510 - 348840633295.4

Displaying genes 3301 – 3310 of 5607 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.