Solirubrum puertoriconensis

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Genus

Solirubrum

Description

Solirubrum puertoriconensis is a bacterium characterized by a single replicon, which indicates that it possesses a single circular chromosome. This trait is notable as it is commonly found in many prokaryotic organisms, allowing for streamlined genetic replication and inheritance processes. The strain is cataloged under the accession LNAL00000000.1, which provides a reference for researchers looking to access its genomic data. The genus Solirubrum is part of the family Solirubraceae, typically known for its role in soil environments. Members of this genus are often studied for their potential applications in bioremediation and soil health due to their metabolic capabilities. Solirubrum puertoriconensis, like its relatives, may contribute to the cycling of nutrients in terrestrial ecosystems. An important ecological insight into Solirubrum puertoriconensis relates to its potential interactions within its environment. Given its classification, it may play a role in the degradation of organic matter, thus participating in nutrient recycling processes essential for soil fertility. This functionality could aid in understanding the dynamics of microbial communities in soil ecosystems and their impact on plant health and productivity. Further research into this species could elucidate its specific roles and contributions to ecological balance and sustainability.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Solirubrum puertoriconensis


Gene Summary

Adenine Count

990946 bp

Thymine Count

990512 bp

Guanine Count

1430711 bp

Cytosine Count

1392545 bp

Genome Length

4804721 bp

Protein-coding Genes

4037 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Trna-ileNot AvailableNot AvailablePositive719 - 792Not Available
Trna-alaNot AvailableNot AvailablePositive829 - 902Not Available
5s ribosomal rnaNot AvailableNot AvailablePositive884 - 995Not Available
5s ribosomal rnaNot AvailableNot AvailablePositive1157 - 1268Not Available
carbamoyl phosphate synthase large subunitASU33_20465P07259Positive2499 - 463779221.8
hypothetical proteinASU33_20470Not AvailablePositive4895 - 518511100.1
acetylornithine carbamoyltransferaseASU33_20475Q8A1E9Positive5590 - 653435366.0
hypothetical proteinASU33_20480Not AvailableNegative6631 - 716119256.2
hypothetical proteinASU33_20485Not AvailableNegative7302 - 860947501.0
homogentisate 1,2-dioxygenaseASU33_20490Q97Y16Negative8625 - 983045831.2

Displaying genes 1 – 10 of 4090 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

209 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000122echinenoneC40H54OChemical structure of echinenoneNot available
Average550.871Da
Monoisotopic550.417466359Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 209 metabolites

Health Effects

No health effects information available for this bacterium.