Cylindrospermopsis sp. CR12

Kingdom

Bacillati

Phylum

Cyanobacteriota

Class

Cyanophyceae

Order

Nostocales

Family

Aphanizomenonaceae

Genus

Cylindrospermopsis

Description

Cylindrospermopsis sp. CR12 is characterized by having a single replicon, which suggests a streamlined genomic structure. This trait can impact the organism's replication and evolutionary dynamics, as a singular replicon may facilitate more efficient genetic replication and stability within its environmental niche. The strain is identified under the accession number LMVE00000000.1, which serves as a unique reference for genomic studies and comparisons with other strains within the Cylindrospermopsis genus. It is essential for researchers to refer to this accession for further genetic analysis and understanding of the organism's phylogenetic relationships. Cylindrospermopsis species are known for their potential ecological impact, particularly in freshwater ecosystems where they can bloom and produce toxins. While specific ecological insights about CR12 are not provided, the general behavior of the genus indicates that strains like CR12 may play a role in nutrient cycling, competition with other phytoplankton, and potentially influencing food web dynamics. Understanding the genetic framework of Cylindrospermopsis sp. CR12, particularly its single replicon structure, can shed light on its adaptability and ecological success. Further investigations could elucidate how these traits contribute to its interactions within aquatic ecosystems and its response to environmental changes.

Taxonomy

KingdomBacillati
PhylumCyanobacteriota
ClassCyanophyceae
OrderNostocales
FamilyAphanizomenonaceae
GenusCylindrospermopsis
SpeciesCylindrospermopsis sp. CR12
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Cylindrospermopsis sp. CR12


Gene Summary

Adenine Count

1114820 bp

Thymine Count

1113787 bp

Guanine Count

744599 bp

Cytosine Count

746337 bp

Genome Length

3723955 bp

Protein-coding Genes

3086 genes

Non-Coding Genes

41 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
5s ribosomal rnaNot AvailableNot AvailablePositive79 - 196Not Available
hypothetical proteinASL19_00010Not AvailableNegative283 - 4927677.41
hypothetical proteinASL19_00015Not AvailableNegative489 - 6897507.98
crispr-associated protein cas2ASL19_00020Q6ZEA5Negative4162 - 444310936.4
crispr-associated protein cas1ASL19_00025Q53VV5Negative4525 - 551737844.9
hypothetical proteinASL19_00030Not AvailableNegative5517 - 578910182.5
crispr-associated protein cmr2ASL19_00035Not AvailablePositive6123 - 773961829.3
crispr-associated proteinASL19_00040Not AvailablePositive7724 - 876739674.2
type iii-b crispr module ramp protein cmr4ASL19_00045Not AvailablePositive8779 - 962431298.3
hypothetical proteinASL19_00050Not AvailablePositive9628 - 1004716351.3

Displaying genes 1 – 10 of 3127 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

168 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000430hercynineC9H15N3O2Chemical structure of hercynineNot available
Average197.238Da
Monoisotopic197.1164267Da
BASm00006473-hydroxypropanoateC3H5O3Chemical structure of 3-hydroxypropanoateNot available
Average89.071Da
Monoisotopic89.0244176Da
BASm00008135-dehydro-D-fructoseC6H10O6Chemical structure of 5-dehydro-D-fructoseNot available
Average178.14Da
Monoisotopic178.047738042Da
BASm0001003phthalateC8H4O4Chemical structure of phthalateNot available
Average164.117Da
Monoisotopic164.0120558Da

Displaying 1–10 of 168 metabolites

Health Effects

No health effects information available for this bacterium.