Oerskovia sp. Root918

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Cellulomonadaceae

Genus

Oerskovia

Description

Oerskovia sp. Root918 is a microbial organism characterized by having a single replicon, which is indicative of its genetic structure and potential replication mechanism. The organism is cataloged under the accession number LMJG00000000.1, allowing for its identification and retrieval from genomic databases. As a member of the Oerskovia genus, Oerskovia sp. Root918 likely exhibits traits common to its relatives, such as the ability to degrade various organic compounds, which can be important in nutrient cycling within its ecosystem. The presence of a single replicon suggests a streamlined genomic architecture that may enhance its adaptability to specific environmental conditions. Understanding the characteristics of Oerskovia sp. Root918 contributes to the broader knowledge of microbial diversity and ecology, particularly in relation to soil and root-associated microbes. These organisms play crucial roles in plant health, soil fertility, and the breakdown of complex organic materials, thereby influencing ecosystem dynamics. The study of this species can provide insights into its ecological functions and potential applications in biotechnology, such as bioremediation or promoting plant growth.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyCellulomonadaceae
GenusOerskovia
SpeciesOerskovia sp. Root918
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Oerskovia sp. Root918 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

619560 bp

Thymine Count

623484 bp

Guanine Count

1636513 bp

Cytosine Count

1607248 bp

Genome Length

4486924 bp

Protein-coding Genes

3594 genes

Non-Coding Genes

82 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
haloacid dehalogenaseASE27_01570Not AvailablePositive355576 - 35627124981.7
aspartate kinaseASE27_01575P41403Positive356544 - 35786346013.0
aspartate-semialdehyde dehydrogenaseASE27_01580P0A543Positive357878 - 35895737015.9
peroxidaseASE27_01585I6Y4U9Positive359213 - 36023236484.6
gntr family transcriptional regulatorASE27_01590Not AvailablePositive360402 - 36079114109.9
abc transporterASE27_01595Q89LP2Positive360788 - 36169332596.7
hypothetical proteinASE27_01600Not AvailablePositive361690 - 36248428107.5
multidrug abc transporter atp-binding proteinASE27_01605Q1BWI2Positive362729 - 36369434662.3
abc transporterASE27_01610Not AvailablePositive363691 - 36451528954.4
nudix hydrolaseASE27_01615Not AvailableNegative364589 - 36508617224.3

Displaying genes 341 – 350 of 3676 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

211 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000275keto-D-sorboseC6H12O6Chemical structure of keto-D-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00006985-dehydro-2-deoxy-D-gluconateC6H9O6Chemical structure of 5-dehydro-2-deoxy-D-gluconateNot available
Average177.133Da
Monoisotopic177.04046159Da
BASm00007131,5-anhydro-D-fructoseC6H10O5Chemical structure of 1,5-anhydro-D-fructoseNot available
Average162.1406Da
Monoisotopic162.05282343Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da

Displaying 1–10 of 211 metabolites

Health Effects

No health effects information available for this bacterium.