Oerskovia sp. Root918

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Cellulomonadaceae

Genus

Oerskovia

Description

Oerskovia sp. Root918 is a microbial organism characterized by having a single replicon, which is indicative of its genetic structure and potential replication mechanism. The organism is cataloged under the accession number LMJG00000000.1, allowing for its identification and retrieval from genomic databases. As a member of the Oerskovia genus, Oerskovia sp. Root918 likely exhibits traits common to its relatives, such as the ability to degrade various organic compounds, which can be important in nutrient cycling within its ecosystem. The presence of a single replicon suggests a streamlined genomic architecture that may enhance its adaptability to specific environmental conditions. Understanding the characteristics of Oerskovia sp. Root918 contributes to the broader knowledge of microbial diversity and ecology, particularly in relation to soil and root-associated microbes. These organisms play crucial roles in plant health, soil fertility, and the breakdown of complex organic materials, thereby influencing ecosystem dynamics. The study of this species can provide insights into its ecological functions and potential applications in biotechnology, such as bioremediation or promoting plant growth.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyCellulomonadaceae
GenusOerskovia
SpeciesOerskovia sp. Root918
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Oerskovia sp. Root918 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

619560 bp

Thymine Count

623484 bp

Guanine Count

1636513 bp

Cytosine Count

1607248 bp

Genome Length

4486924 bp

Protein-coding Genes

3594 genes

Non-Coding Genes

82 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Trna-ileNot AvailableNot AvailablePositive1692213 - 1692286Not Available
hypothetical proteinASE27_19015P9WMA6Negative1692414 - 169292617582.6
dna gyrase subunit aASE27_19020P35885Negative1693445 - 169606096436.8
dna topoisomerase iv subunit bASE27_19025C5C7X8Negative1696326 - 169839576123.5
rna-binding proteinASE27_19030A0QND9Negative1698711 - 169922918493.2
recombinase recfASE27_19035C5BUP6Negative1699297 - 170051143248.6
6-phosphogluconate dehydrogenaseASE27_19040G5EBD7Negative1700682 - 170158431322.3
dna polymerase iii subunit betaASE27_19045P27903Negative1701634 - 170276440020.7
chromosomal replication initiation proteinASE27_19050A6W3V4Negative1704071 - 170549552886.1
membrane protein insertion efficiency factor yiddASE27_19055O34601Positive1706509 - 170680811154.7

Displaying genes 1371 – 1380 of 3676 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

211 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000275keto-D-sorboseC6H12O6Chemical structure of keto-D-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00006985-dehydro-2-deoxy-D-gluconateC6H9O6Chemical structure of 5-dehydro-2-deoxy-D-gluconateNot available
Average177.133Da
Monoisotopic177.04046159Da
BASm00007131,5-anhydro-D-fructoseC6H10O5Chemical structure of 1,5-anhydro-D-fructoseNot available
Average162.1406Da
Monoisotopic162.05282343Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da

Displaying 1–10 of 211 metabolites

Health Effects

No health effects information available for this bacterium.