Pseudomonas sp. Root9

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. Root9 is characterized by possessing a single replicon, indicating a streamlined genetic structure. The organism is cataloged under the accession number LMIY00000000.1, which serves as a reference point for genetic and genomic studies. Pseudomonas species are known for their ecological versatility and adaptability, often found in diverse environments ranging from soil to water. This adaptability suggests that Pseudomonas sp. Root9 may play a role in various ecological niches, potentially contributing to nutrient cycling or bioremediation processes. The presence of a single replicon may also indicate a specific evolutionary strategy that allows this strain to thrive under certain environmental conditions. In conclusion, Pseudomonas sp. Root9's single-replicon structure and its classification under a unique accession highlight its potential significance in microbial ecology. Understanding the traits of this strain can provide insights into its role in its native environment, including interactions with other microorganisms and its contribution to ecosystem functions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. Root9
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. Root9
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. Root9 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

1304069 bp

Thymine Count

1334348 bp

Guanine Count

1973326 bp

Cytosine Count

1940822 bp

Genome Length

6554480 bp

Protein-coding Genes

5600 genes

Non-Coding Genes

170 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinASE33_13680Not AvailablePositive6050371 - 60505868196.32
filamentous hemagglutininASE33_13685P15320Negative6050739 - 6055694171199.0
shlb family hemolysin secretion/activation proteinASE33_13690P15321Negative6055815 - 605753063623.2
quinolinate synthase aASE33_13695Q3K7X0Positive6058001 - 605905938196.1
hypothetical proteinASE33_13700Not AvailableNegative6059801 - 606028918301.7
cold-shock proteinASE33_13705P72192Negative6060384 - 60606027908.24
glycine cleavage system protein tASE33_13710Q54DD3Negative6060996 - 606212040355.0
serine dehydrataseASE33_13715O86564Negative6062160 - 606353648816.9
glycine dehydrogenaseASE33_13720C3JYR1Negative6063699 - 6066536102085.0
glycine cleavage system protein hASE33_13725Q88P64Negative6066547 - 606693013811.0

Displaying genes 5311 – 5320 of 5770 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

359 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da

Displaying 1–10 of 359 metabolites

Health Effects

No health effects information available for this bacterium.