Agromyces sp. Root81

rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Agromyces

Description

Agromyces sp. Root81 is a Gram-positive bacterium characterized by its rod shape. This organism possesses a single replicon, which is significant for its genetic stability and replication. The accession number for this strain is LMIR00000000.1, indicating that it is cataloged in biological databases for further research and study. The Gram-positive nature of Agromyces sp. Root81 suggests that it has a thick peptidoglycan layer in its cell wall, which is a typical feature of this classification. This structural characteristic often contributes to the organism's resilience in various environments, enabling it to survive in conditions where other microbes may not. In terms of ecological and biological implications, the presence of Agromyces species, including Agromyces sp. Root81, is often associated with plant roots. These bacteria can play a role in soil health and plant growth through various mechanisms, such as promoting nutrient availability and enhancing soil structure. Understanding the traits of Agromyces sp. Root81 can provide insights into its potential applications in agriculture and soil management, particularly in promoting sustainable practices. The study of such bacteria is essential for elucidating their roles in ecosystems and their contributions to plant-microbe interactions.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusAgromyces
SpeciesAgromyces sp. Root81
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-positive
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agromyces sp. Root81 contig_6, whole genome shotgun sequence.

Gene Summary

Adenine Count

628909 bp

Thymine Count

631207 bp

Guanine Count

1447876 bp

Cytosine Count

1450399 bp

Genome Length

4158469 bp

Protein-coding Genes

3806 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinASE14_01575P77463Positive322950 - 32378929747.0
dipeptide/oligopeptide/nickel abc transporter atp-binding proteinASE14_01580P26905Positive323810 - 32465829849.4
hypothetical proteinASE14_01585P24137Positive324655 - 32543727828.9
hypothetical proteinASE14_01590Q14254Negative325460 - 32691451239.2
hypothetical proteinASE14_01595Not AvailableNegative327018 - 32748815754.5
hypothetical proteinASE14_01600Not AvailableNegative327635 - 32839627599.7
3'-5' exonucleaseASE14_01605Not AvailablePositive328491 - 33028463434.4
hypothetical proteinASE14_01610Not AvailableNegative330263 - 33090422166.6
hypothetical proteinASE14_01615Not AvailablePositive331075 - 33159619028.3
3-oxoacyl-acp synthaseASE14_01620P73283Negative331746 - 33298142797.4

Displaying genes 311 – 320 of 3858 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

256 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000275keto-D-sorboseC6H12O6Chemical structure of keto-D-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 256 metabolites

Health Effects

No health effects information available for this bacterium.